Os02g0250600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Late embryogenesis abundant protein repeat containing protein.
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Os02g0250600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Late embryogenesis abundant protein repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.48 | 0.61 | 5.19 | 4.75 | 0.0018 | 153 | -1.89 | 318 | -0.0793 | 14.2 | 15 | 4464 | -- | -- |
| 179.65 | 0.629 | 3.03 | -0.19 | 0.00409 | 0.964 | 1.78 | -- | -0.164 | 2.52 | 15 | 4464 | -- | -- |
| 179.54 | 0.624 | 5.12 | 4.57 | 0.149 | 154 | -- | 320 | -0.0952 | 20.5 | 14.99 | 4117 | -- | -- |
| 179.87 | 0.625 | 3 | 0.094 | 0.0145 | 0.796 | -- | -- | -0.00791 | 2.12 | 23.2 | 2959 | -- | -- |
| 180.64 | 0.626 | 5.07 | 4.4 | -- | 153 | -- | 317 | -0.0907 | -- | 14.98 | 4118 | -- | -- |
| 181.4 | 0.631 | 3.04 | -0.231 | 0.0133 | -- | 1.68 | -- | -0.174 | 2.63 | -- | -- | -- | -- |
| 190.01 | 0.646 | 3.04 | -0.273 | 0.157 | -- | -- | -- | -0.182 | 20.7 | -- | -- | -- | -- |
| 179.83 | 0.625 | 3 | 0.123 | -- | 0.887 | -- | -- | 0.0151 | -- | 22.98 | 2970 | -- | -- |
| 179.75 | 0.624 | 3 | -- | 0.0813 | 0.829 | -- | -- | 0.00436 | 1.68 | 23.23 | 2901 | -- | -- |
| 191.4 | 0.646 | 3.04 | -0.273 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 191.97 | 0.648 | 3.04 | -- | 0.157 | -- | -- | -- | -0.152 | 20.6 | -- | -- | -- | -- |
| 180.1 | 0.625 | 3 | -- | -- | 0.815 | -- | -- | -0.00314 | -- | 23.21 | 2954 | -- | -- |
| 193.37 | 0.649 | 3.03 | -- | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.78 | wind | 1 | 10 | < th | dose dependent | rect. | 24 | 3 |
| 4 | 162.93 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 5 |
| 6 | 164.06 | wind | 1 | 10 | < th | dose independent | rect. | 24 | 3 |
| 7 | 164.06 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 10 | 164.21 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 5 |
| 39 | 165.17 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 50 | 165.56 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 62 | 165.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 10 | 16 |
| 77 | 165.97 | humidity | 90 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 83 | 166.03 | temperature | 25 | 30 | < th | dose dependent | sin | 15 | NA |
| 87 | 166.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 91 | 166.07 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 101 | 166.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 105 | 166.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 119 | 166.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 124 | 166.28 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 137 | 166.33 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 138 | 166.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 143 | 166.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 151 | 166.47 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 154 | 166.49 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 155 | 166.49 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 165 | 166.53 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 166 | 166.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 168 | 166.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 172 | 166.56 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 180 | 166.60 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 187 | 166.62 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 205 | 166.70 | humidity | 90 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 214 | 166.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 227 | 166.76 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 247 | 166.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 258 | 166.84 | humidity | 70 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 269 | 166.88 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 2 |
| 286 | 166.92 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 303 | 166.92 | radiation | 40 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 332 | 166.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 338 | 166.96 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 360 | 167.02 | wind | 3 | 14400 | < th | dose independent | sin | 2 | NA |
| 372 | 167.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 384 | 167.06 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 397 | 167.09 | wind | 3 | 14400 | > th | dose independent | sin | 2 | NA |
| 398 | 167.09 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 405 | 167.10 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 408 | 167.10 | wind | 3 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 409 | 167.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 412 | 167.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 420 | 167.13 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 421 | 167.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 454 | 167.19 | humidity | 90 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 458 | 167.20 | humidity | 90 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 491 | 167.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 499 | 167.27 | humidity | 60 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 517 | 167.29 | wind | 3 | 14400 | < th | dose dependent | sin | 3 | NA |
| 524 | 167.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 530 | 167.31 | wind | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 543 | 167.32 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 580 | 167.36 | humidity | 50 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 599 | 167.37 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 8 |
| 617 | 167.39 | humidity | 90 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 635 | 167.40 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 647 | 167.41 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 692 | 167.45 | wind | 5 | 14400 | < th | dose dependent | rect. | 1 | 15 |
| 705 | 167.46 | wind | 1 | 10 | < th | dose dependent | rect. | 14 | 13 |
| 720 | 167.47 | temperature | 15 | 4320 | < th | dose dependent | rect. | 15 | 10 |
| 749 | 167.49 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 751 | 167.49 | temperature | 15 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 756 | 167.49 | wind | 1 | 10 | < th | dose dependent | rect. | 17 | 10 |
| 764 | 167.50 | wind | 1 | 10 | < th | dose dependent | rect. | 21 | 6 |
| 816 | 167.54 | temperature | 15 | 4320 | < th | dose dependent | sin | 16 | NA |
| 862 | 167.58 | humidity | 90 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 870 | 167.59 | temperature | 15 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 895 | 167.60 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 922 | 167.62 | wind | 1 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 973 | 167.65 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 990 | 167.66 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 991 | 167.67 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 1 |