Os02g0249600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0249600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutelin.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.95	(0.0369)	R²	:	0.116
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	1.21	(0.157)	R²_dE	:	0.116	R²_E	:	0.116
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.011	(0.0779)	R²_dN8	:	5e-05	R²_N8	:	0.000313
σ	:	0.694
deviance	:	221.78
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	89.43
memory length	:	683
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	4.85
open length of G	:	0.914

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
220.12	0.697	2.96	-0.0316	0.114	1.27	-0.328	0.464	-0.0198	1.04	89.19	669	4.87	0.959
220.42	0.691	2.95	-0.0301	0.12	1.26	-0.393	--	-0.0163	0.943	89.01	669	4.87	0.95
220.45	0.692	2.96	-0.03	0.115	1.28	--	0.576	-0.0184	23.8	89.49	673	4.84	0.936
220.96	0.692	2.95	-0.0206	0.117	1.26	--	--	-0.0132	23.9	89.38	682	4.84	0.927
221.22	0.693	2.95	-0.0311	--	1.23	--	0.603	-0.0191	--	89.56	674	4.85	0.94
249.97	0.741	2.96	-0.109	0.0827	--	-0.209	--	-0.0643	6.95	--	--	--	--
250	0.74	2.96	-0.111	0.0882	--	--	--	-0.0631	8.58	--	--	--	--
221.76	0.694	2.95	-0.0244	--	1.21	--	--	-0.0138	--	89.35	686	4.84	0.916
220.97	0.692	2.95	--	0.117	1.26	--	--	-0.0109	23.9	89.39	685	4.84	0.929
250.44	0.739	2.96	-0.111	--	--	--	--	-0.0623	--	--	--	--	--
250.33	0.74	2.96	--	0.0878	--	--	--	-0.0507	8.68	--	--	--	--
221.78	0.694	2.95	--	--	1.21	--	--	-0.011	--	89.43	683	4.85	0.914
250.76	0.739	2.96	--	--	--	--	--	-0.05	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	222.13	humidity	90	1440	< th	dose dependent	rect.	1	6
2	222.66	humidity	90	720	< th	dose independent	rect.	5	1
3	223.02	humidity	80	1440	< th	dose dependent	rect.	6	1
7	223.88	humidity	90	720	< th	dose dependent	rect.	4	3
15	224.74	temperature	25	90	< th	dose dependent	rect.	9	2
17	224.76	temperature	25	10	< th	dose dependent	rect.	8	2
20	224.86	temperature	25	1440	< th	dose dependent	rect.	9	3
24	225.11	humidity	80	1440	> th	dose independent	rect.	6	1
39	226.21	temperature	25	90	< th	dose dependent	rect.	8	8
42	226.31	humidity	50	1440	> th	dose dependent	rect.	1	6
71	227.40	temperature	25	10	< th	dose dependent	rect.	8	9
77	227.51	wind	7	1440	< th	dose independent	rect.	6	3
81	227.61	humidity	80	720	< th	dose dependent	rect.	21	11
88	227.82	wind	7	1440	> th	dose independent	rect.	8	1
93	227.97	wind	7	1440	< th	dose independent	rect.	8	1
116	228.46	humidity	70	1440	> th	dose dependent	rect.	5	1
121	228.51	humidity	50	1440	> th	dose dependent	rect.	1	1
134	228.70	humidity	80	270	< th	dose independent	rect.	22	10
149	228.79	temperature	25	90	< th	dose dependent	rect.	8	5
150	228.80	wind	7	1440	< th	dose independent	rect.	3	6
240	229.99	wind	7	1440	> th	dose dependent	rect.	8	1
243	230.01	humidity	80	1440	< th	dose dependent	rect.	21	5
250	230.11	temperature	20	90	< th	dose independent	rect.	8	1
286	230.53	humidity	80	720	< th	dose independent	rect.	23	8
289	230.60	humidity	80	90	< th	dose dependent	rect.	23	8
291	230.62	humidity	80	720	> th	dose independent	rect.	23	9
304	230.85	humidity	80	720	< th	dose independent	rect.	23	2
330	231.02	wind	7	1440	> th	dose dependent	rect.	2	7
409	231.64	temperature	20	720	< th	dose dependent	rect.	22	1
443	231.94	humidity	80	1440	> th	dose independent	rect.	1	1
469	232.10	humidity	80	1440	> th	dose independent	rect.	24	7
600	233.16	temperature	20	720	< th	dose independent	rect.	22	1
775	234.35	humidity	70	720	> th	dose dependent	sin	9	NA
824	234.58	temperature	20	270	< th	dose independent	rect.	6	2
859	234.73	humidity	80	1440	> th	dose independent	rect.	22	4