Os02g0249300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os02g0249300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.62 | 0.597 | 11.4 | 0.352 | 0.411 | -0.902 | -0.196 | -0.215 | -0.193 | 14 | 22.17 | 1496 | -- | -- |
| 161.72 | 0.592 | 11.4 | 0.419 | 0.408 | -0.902 | -0.188 | -- | -0.176 | 14 | 22.19 | 1477 | -- | -- |
| 161.74 | 0.592 | 11.4 | 0.349 | 0.407 | -0.903 | -- | -0.205 | -0.194 | 13.8 | 22.15 | 1479 | -- | -- |
| 161.84 | 0.593 | 11.4 | 0.413 | 0.406 | -0.901 | -- | -- | -0.179 | 13.8 | 22.2 | 1477 | -- | -- |
| 167.67 | 0.603 | 11.4 | 0.347 | -- | -0.9 | -- | -0.081 | -0.186 | -- | 22.23 | 1003 | -- | -- |
| 191.06 | 0.648 | 11.4 | 0.0902 | 0.441 | -- | -0.245 | -- | -0.473 | 14.1 | -- | -- | -- | -- |
| 191.27 | 0.648 | 11.4 | 0.0827 | 0.439 | -- | -- | -- | -0.475 | 13.9 | -- | -- | -- | -- |
| 167.69 | 0.603 | 11.4 | 0.373 | -- | -0.899 | -- | -- | -0.18 | -- | 22.3 | 1003 | -- | -- |
| 165 | 0.598 | 11.4 | -- | 0.277 | -0.768 | -- | -- | -0.259 | 14.9 | 22.4 | 1001 | -- | -- |
| 202.91 | 0.666 | 11.4 | 0.0646 | -- | -- | -- | -- | -0.485 | -- | -- | -- | -- | -- |
| 191.45 | 0.647 | 11.4 | -- | 0.438 | -- | -- | -- | -0.484 | 13.9 | -- | -- | -- | -- |
| 171.02 | 0.609 | 11.4 | -- | -- | -0.809 | -- | -- | -0.242 | -- | 22.31 | 959 | -- | -- |
| 203.02 | 0.665 | 11.4 | -- | -- | -- | -- | -- | -0.492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.72 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 6 | 164.15 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 7 | 164.18 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 24 | 164.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 54 | 164.73 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 63 | 164.78 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 68 | 164.83 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 72 | 164.85 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 73 | 164.85 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 92 | 164.95 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 117 | 165.06 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 118 | 165.06 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 122 | 165.08 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 192 | 165.37 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 203 | 165.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 206 | 165.42 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 209 | 165.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 220 | 165.47 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 235 | 165.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 243 | 165.56 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 246 | 165.57 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 252 | 165.58 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 279 | 165.70 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 289 | 165.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 337 | 165.89 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 367 | 166.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 368 | 166.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 369 | 166.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 375 | 166.03 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 383 | 166.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 399 | 166.12 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 476 | 166.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 519 | 166.48 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 553 | 166.59 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 656 | 166.83 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 668 | 166.85 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 808 | 167.14 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 869 | 167.27 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 957 | 167.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 964 | 167.51 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 972 | 167.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 982 | 167.54 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 983 | 167.54 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |