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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0249000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutelin type-B 2 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0156) R2 : 0.00154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0275 (0.0328) R2dN8 : 0.00198 R2N8 : 0.00154
σ : 0.294
deviance : 39.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.37 0.279 3.25 0.213 0.204 -0.265 0.0906 -0.924 -0.0607 7.46 47.11 4842 -- --
36.48 0.281 3.25 0.143 0.202 -0.233 0.101 -- -0.077 7.53 65.02 4828 -- --
35.39 0.277 3.25 0.21 0.205 -0.265 -- -0.894 -0.0617 7.35 43 4830 -- --
36.32 0.281 3.25 0.147 0.2 -0.251 -- -- -0.102 7.37 76.25 7658 -- --
36.82 0.283 3.25 0.221 -- -0.242 -- -0.983 -0.0487 -- 38.63 5857 -- --
37.57 0.287 3.23 0.121 0.173 -- -0.0169 -- -0.0166 7.44 -- -- -- --
37.57 0.287 3.23 0.121 0.172 -- -- -- -0.0165 7.47 -- -- -- --
37.93 0.287 3.26 0.164 -- -0.262 -- -- -0.111 -- 74.9 7223 -- --
36.96 0.283 3.26 -- 0.195 -0.236 -- -- -0.115 7.35 73 7709 -- --
39.16 0.292 3.24 0.124 -- -- -- -- -0.0138 -- -- -- -- --
37.96 0.288 3.24 -- 0.174 -- -- -- -0.03 7.42 -- -- -- --
38.62 0.289 3.26 -- -- -0.226 -- -- -0.114 -- 73 7222 -- --
39.57 0.294 3.24 -- -- -- -- -- -0.0275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.48 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 32.76 precipitation 0.1 10 < th dose independent rect. 3 23
4 32.76 precipitation 0.1 10 < th dose dependent rect. 3 23
5 32.77 atmosphere 1005.0 10 > th dose dependent rect. 2 2
11 33.39 atmosphere 1010.0 30 < th dose dependent rect. 2 1
16 33.61 temperature 25.0 90 > th dose independent rect. 1 1
17 33.61 wind 1.0 30 < th dose dependent rect. 2 1
19 33.63 wind 3.0 10 < th dose independent rect. 2 1
22 33.64 wind 7.0 10 < th dose dependent rect. 2 1
29 33.67 temperature 10.0 10 > th dose independent rect. 2 1
31 33.67 temperature 30.0 10 < th dose independent rect. 2 1
32 33.67 humidity 50.0 10 > th dose independent rect. 2 1
35 33.67 atmosphere 995.0 10 > th dose independent rect. 2 1
36 33.67 atmosphere 1010.0 10 < th dose independent rect. 2 1
38 33.67 radiation 1.0 10 < th dose independent rect. 2 1
43 33.67 precipitation 0.1 10 < th dose independent rect. 2 1
44 33.67 temperature 10.0 10 > th dose independent rect. 3 23
46 33.67 radiation 1.0 10 < th dose dependent rect. 2 1
51 33.67 precipitation 0.1 10 < th dose dependent rect. 2 1
55 33.68 temperature 10.0 10 > th dose dependent rect. 2 1
56 33.68 humidity 50.0 10 > th dose dependent rect. 2 1
61 33.70 temperature 30.0 10 < th dose dependent rect. 2 1
110 33.77 wind 1.0 30 > th dose independent rect. 2 1
125 33.84 humidity 80.0 14400 < th dose dependent rect. 2 7
132 33.91 wind 9.0 30 < th dose independent rect. 3 23
139 34.00 radiation 1.0 43200 < th dose dependent rect. 3 1
151 34.14 humidity 80.0 14400 < th dose dependent rect. 21 13
154 34.21 radiation 1.0 4320 < th dose dependent rect. 3 1
163 34.25 wind 9.0 1440 < th dose independent rect. 3 1
164 34.25 temperature 10.0 1440 > th dose independent rect. 3 1
167 34.25 temperature 30.0 1440 < th dose independent rect. 3 1
171 34.25 humidity 50.0 1440 > th dose independent rect. 3 1
180 34.25 atmosphere 995.0 1440 > th dose independent rect. 3 1
181 34.25 radiation 1.0 1440 < th dose independent rect. 3 1
201 34.25 temperature 10.0 1440 > th dose independent rect. 4 23
224 34.33 humidity 90.0 90 < th dose independent rect. 2 1
265 34.55 atmosphere 995.0 720 > th dose independent rect. 23 16
266 34.56 humidity 90.0 90 < th dose independent rect. 1 3
267 34.56 humidity 50.0 30 > th dose independent rect. 3 23
272 34.59 humidity 70.0 14400 > th dose independent rect. 8 1
273 34.59 humidity 70.0 14400 < th dose independent rect. 21 13
275 34.60 humidity 70.0 14400 < th dose independent rect. 7 3
287 34.61 humidity 70.0 14400 > th dose independent rect. 20 14
290 34.62 humidity 70.0 14400 > th dose independent rect. 5 5
293 34.62 humidity 70.0 14400 > th dose independent rect. 1 9
298 34.63 humidity 70.0 14400 > th dose independent rect. 7 3
378 34.92 wind 5.0 14400 < th dose dependent rect. 10 2
383 34.95 wind 3.0 14400 > th dose independent rect. 10 2
398 35.01 wind 3.0 14400 > th dose independent rect. 19 1
403 35.04 humidity 80.0 14400 < th dose dependent sin 8 NA
440 35.10 wind 1.0 14400 < th dose dependent rect. 6 1
442 35.11 wind 3.0 14400 < th dose independent rect. 19 1
445 35.12 wind 3.0 14400 < th dose independent rect. 10 2
446 35.12 atmosphere 1000.0 10 > th dose independent rect. 21 23
449 35.13 atmosphere 995.0 720 > th dose independent rect. 7 8
452 35.15 humidity 50.0 14400 > th dose dependent rect. 8 1
456 35.16 wind 1.0 14400 > th dose dependent rect. 11 1
459 35.17 humidity 90.0 720 < th dose independent rect. 1 3
462 35.17 atmosphere 995.0 10 > th dose dependent rect. 4 22
470 35.19 humidity 70.0 4320 > th dose dependent rect. 3 8
471 35.20 humidity 60.0 14400 < th dose independent rect. 11 1
486 35.24 wind 5.0 14400 < th dose independent rect. 10 5
500 35.25 humidity 80.0 4320 > th dose dependent rect. 6 3
505 35.26 wind 5.0 14400 < th dose independent rect. 10 7
509 35.26 wind 3.0 14400 > th dose dependent rect. 10 5
517 35.27 humidity 90.0 90 < th dose dependent rect. 2 1
524 35.29 humidity 60.0 14400 < th dose dependent rect. 12 1
531 35.30 wind 5.0 14400 > th dose independent rect. 10 7
548 35.32 wind 5.0 14400 > th dose independent rect. 10 5
551 35.32 atmosphere 1000.0 10 > th dose independent rect. 16 10
572 35.33 humidity 50.0 4320 > th dose dependent rect. 23 16
576 35.34 radiation 40.0 10 < th dose independent rect. 3 23
587 35.35 humidity 50.0 14400 > th dose independent rect. 15 1
595 35.35 humidity 50.0 4320 > th dose dependent rect. 11 2
620 35.36 humidity 50.0 4320 > th dose dependent rect. 2 13
627 35.37 humidity 90.0 4320 < th dose independent rect. 4 5
645 35.38 wind 1.0 30 < th dose independent rect. 21 6
650 35.38 humidity 80.0 14400 < th dose independent rect. 23 15
651 35.38 humidity 50.0 4320 > th dose dependent sin 5 NA
655 35.38 wind 1.0 14400 < th dose dependent rect. 4 3
684 35.39 wind 7.0 14400 < th dose dependent rect. 10 5
698 35.40 wind 1.0 14400 < th dose independent rect. 4 3
704 35.40 wind 1.0 10 < th dose independent rect. 13 14
706 35.40 humidity 60.0 14400 < th dose independent rect. 19 18
707 35.40 temperature 30.0 1440 > th dose independent rect. 15 20
708 35.40 temperature 30.0 1440 < th dose independent rect. 15 20
713 35.40 wind 5.0 14400 < th dose dependent rect. 19 1
737 35.41 temperature 10.0 720 > th dose independent rect. 15 8
752 35.41 temperature 10.0 720 > th dose independent rect. 23 16
755 35.41 atmosphere 1000.0 90 < th dose independent rect. 6 20
758 35.41 humidity 90.0 4320 < th dose dependent rect. 11 2
772 35.42 humidity 60.0 14400 > th dose independent rect. 10 2
804 35.43 humidity 70.0 4320 > th dose independent rect. 8 10
837 35.44 atmosphere 1000.0 720 > th dose independent rect. 3 8
861 35.44 humidity 80.0 14400 > th dose independent rect. 23 15
903 35.44 humidity 90.0 4320 < th dose dependent rect. 23 17
911 35.45 wind 1.0 14400 > th dose independent rect. 4 3
918 35.45 humidity 70.0 4320 > th dose independent rect. 10 8
922 35.45 wind 1.0 10 < th dose independent rect. 6 21
938 35.45 humidity 90.0 4320 < th dose dependent rect. 3 13
956 35.46 humidity 70.0 4320 > th dose independent rect. 10 5
960 35.46 precipitation 0.1 14400 > th dose independent rect. 24 9