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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0248800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glutelin type-B 2 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.00974) R2 : 0.0069
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0365 (0.0205) R2dN8 : 0.0089 R2N8 : 0.0069
σ : 0.183
deviance : 15.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.73 0.18 2.83 0.0797 0.219 -0.159 -0.276 0.385 0.0531 12.4 0.8302 223 -- --
15.04 0.182 2.84 0.0532 0.12 -0.05 0.0667 -- 0.0429 10.4 0.7206 179 -- --
14.82 0.179 2.83 0.0648 0.179 -0.126 -- 0.213 0.0413 12.3 0.8322 221 -- --
14.89 0.18 2.84 0.0584 0.18 -0.125 -- -- 0.0483 12.1 1.5 196 -- --
15.22 0.183 2.84 0.053 -- 0.031 -- 0.0816 0.0399 -- 3.806 354 -- --
15.1 0.182 2.84 0.0517 0.0673 -- 0.0283 -- 0.042 9.39 -- -- -- --
15.11 0.182 2.84 0.0525 0.0677 -- -- -- 0.0419 9.14 -- -- -- --
15.16 0.181 2.84 0.0413 -- -0.0719 -- -- 0.0499 -- 22.29 900 -- --
14.97 0.18 2.84 -- 0.192 -0.131 -- -- 0.0438 12.1 1.476 181 -- --
15.37 0.183 2.84 0.0524 -- -- -- -- 0.0423 -- -- -- -- --
15.18 0.182 2.84 -- 0.0678 -- -- -- 0.0361 9.08 -- -- -- --
15.13 0.181 2.84 -- -- -0.0882 -- -- 0.0453 -- 39.13 865 -- --
15.44 0.183 2.84 -- -- -- -- -- 0.0365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.99 temperature 25.0 90 > th dose independent rect. 3 3
3 14.08 temperature 25.0 270 > th dose independent rect. 4 1
5 14.11 atmosphere 1005.0 10 > th dose dependent rect. 4 1
6 14.12 wind 3.0 10 < th dose independent rect. 4 1
10 14.12 wind 7.0 1440 < th dose independent rect. 5 1
12 14.12 temperature 10.0 1440 > th dose independent rect. 5 1
15 14.12 temperature 30.0 1440 < th dose independent rect. 5 1
19 14.12 humidity 50.0 1440 > th dose independent rect. 5 1
28 14.12 humidity 90.0 10 < th dose independent rect. 4 1
30 14.12 atmosphere 995.0 1440 > th dose independent rect. 5 1
31 14.12 atmosphere 1015.0 1440 < th dose independent rect. 5 1
32 14.12 radiation 20.0 1440 < th dose independent rect. 5 1
42 14.12 temperature 10.0 1440 > th dose independent rect. 6 23
45 14.12 temperature 25.0 270 > th dose dependent rect. 4 1
46 14.12 temperature 30.0 30 < th dose dependent rect. 4 1
49 14.12 temperature 25.0 270 > th dose dependent rect. 2 3
50 14.13 wind 1.0 30 > th dose independent rect. 4 1
55 14.13 temperature 10.0 30 > th dose independent rect. 4 1
57 14.13 temperature 30.0 30 < th dose independent rect. 4 1
58 14.13 humidity 80.0 10 > th dose independent rect. 4 1
59 14.13 humidity 50.0 30 > th dose independent rect. 4 1
63 14.13 atmosphere 1005.0 10 > th dose independent rect. 4 1
64 14.13 atmosphere 995.0 30 > th dose independent rect. 4 1
67 14.13 atmosphere 1010.0 30 < th dose independent rect. 4 1
69 14.13 radiation 1.0 30 < th dose independent rect. 4 1
74 14.13 precipitation 0.1 30 < th dose independent rect. 4 1
75 14.13 temperature 10.0 30 > th dose independent rect. 5 23
76 14.13 wind 5.0 10 < th dose dependent rect. 4 1
83 14.13 temperature 10.0 10 > th dose dependent rect. 4 1
85 14.13 humidity 50.0 30 > th dose dependent rect. 4 1
92 14.13 atmosphere 1015.0 30 < th dose dependent rect. 4 1
93 14.13 radiation 1.0 30 < th dose dependent rect. 4 1
98 14.13 precipitation 0.1 30 < th dose dependent rect. 4 1
141 14.15 humidity 90.0 90 < th dose dependent rect. 4 1
151 14.16 humidity 90.0 10 < th dose dependent rect. 4 1
167 14.18 wind 1.0 30 > th dose dependent rect. 4 1
174 14.20 atmosphere 995.0 30 > th dose independent rect. 5 23
177 14.22 temperature 25.0 1440 > th dose independent rect. 4 1
181 14.22 wind 9.0 30 < th dose independent rect. 5 23
191 14.26 precipitation 0.1 30 < th dose independent rect. 5 23
193 14.26 precipitation 0.1 30 < th dose dependent rect. 5 23
205 14.31 humidity 80.0 4320 < th dose dependent rect. 3 1
225 14.37 humidity 80.0 4320 < th dose independent rect. 4 1
231 14.38 humidity 90.0 10 < th dose independent rect. 2 3
244 14.40 temperature 25.0 270 > th dose dependent rect. 1 5
280 14.49 temperature 25.0 1440 < th dose independent rect. 1 1
284 14.49 humidity 90.0 10 < th dose independent rect. 2 5
294 14.50 wind 1.0 720 > th dose independent rect. 7 10
304 14.51 temperature 30.0 30 < th dose independent rect. 5 23
305 14.51 temperature 25.0 10 > th dose dependent rect. 6 1
322 14.54 atmosphere 1010.0 30 < th dose independent rect. 6 1
323 14.54 radiation 10.0 30 < th dose independent rect. 6 1
334 14.54 temperature 10.0 30 > th dose dependent rect. 5 23
352 14.56 wind 1.0 30 > th dose dependent rect. 6 1
353 14.56 humidity 90.0 30 < th dose dependent rect. 6 1
369 14.58 wind 1.0 90 > th dose independent rect. 19 12
378 14.59 temperature 25.0 30 > th dose independent rect. 6 1
384 14.59 atmosphere 1015.0 30 < th dose dependent rect. 6 1
385 14.59 radiation 1.0 10 > th dose dependent rect. 6 1
388 14.59 temperature 10.0 720 > th dose dependent rect. 7 2
394 14.59 temperature 10.0 90 > th dose dependent rect. 7 12
400 14.60 wind 1.0 720 > th dose independent rect. 7 2
406 14.60 temperature 20.0 720 > th dose independent rect. 7 10
408 14.60 temperature 20.0 90 > th dose independent rect. 7 12
409 14.60 temperature 25.0 1440 > th dose dependent rect. 1 1
426 14.61 atmosphere 1005.0 270 > th dose dependent rect. 1 3
439 14.62 atmosphere 1010.0 30 < th dose independent rect. 8 11
442 14.62 temperature 25.0 1440 > th dose dependent rect. 4 1
448 14.62 radiation 20.0 30 < th dose dependent rect. 6 1
452 14.62 wind 1.0 720 < th dose dependent rect. 7 7
458 14.63 wind 9.0 1440 < th dose independent rect. 7 1
461 14.63 temperature 10.0 1440 > th dose independent rect. 7 1
466 14.63 temperature 30.0 1440 < th dose independent rect. 7 1
474 14.63 humidity 50.0 1440 > th dose independent rect. 7 1
480 14.63 atmosphere 995.0 1440 > th dose independent rect. 7 1
483 14.63 atmosphere 1015.0 1440 < th dose independent rect. 7 1
493 14.63 wind 1.0 720 < th dose independent rect. 7 7
502 14.63 temperature 10.0 1440 > th dose independent rect. 8 23
505 14.63 humidity 50.0 30 > th dose independent rect. 5 23
508 14.63 humidity 80.0 1440 > th dose dependent rect. 12 1
516 14.64 humidity 80.0 1440 > th dose independent rect. 12 1
517 14.64 humidity 90.0 90 > th dose independent rect. 19 1
518 14.64 humidity 90.0 30 < th dose independent rect. 6 1
539 14.64 temperature 10.0 90 > th dose dependent rect. 7 20
541 14.65 atmosphere 1005.0 30 > th dose independent rect. 6 1
542 14.65 radiation 1.0 30 > th dose independent rect. 6 1
551 14.65 humidity 70.0 720 > th dose independent rect. 19 10
552 14.65 temperature 20.0 10 > th dose independent rect. 8 11
596 14.66 temperature 10.0 10 > th dose dependent rect. 7 13
604 14.67 humidity 70.0 720 > th dose independent rect. 19 2
605 14.67 radiation 1.0 720 > th dose independent rect. 7 2
615 14.67 humidity 90.0 90 < th dose independent rect. 7 12
634 14.68 wind 3.0 30 < th dose independent rect. 6 1
648 14.68 wind 9.0 90 < th dose independent rect. 7 12
650 14.68 humidity 60.0 720 > th dose independent rect. 17 12
652 14.68 radiation 10.0 90 < th dose independent rect. 19 12
674 14.68 radiation 30.0 270 < th dose dependent rect. 9 20
679 14.69 wind 1.0 10 > th dose independent rect. 6 1
687 14.69 precipitation 0.1 720 < th dose independent rect. 19 2
689 14.69 temperature 15.0 720 > th dose independent rect. 5 4
696 14.69 wind 1.0 30 > th dose independent rect. 4 10
701 14.69 humidity 50.0 720 > th dose independent rect. 17 14
702 14.69 wind 9.0 30 < th dose independent rect. 7 23
703 14.69 wind 1.0 720 < th dose dependent rect. 8 1
704 14.69 temperature 25.0 720 > th dose dependent rect. 7 1
706 14.69 atmosphere 995.0 30 > th dose dependent rect. 6 1
709 14.69 precipitation 0.1 720 < th dose dependent rect. 19 2
730 14.70 humidity 80.0 1440 < th dose independent rect. 12 1
732 14.70 wind 7.0 720 < th dose independent rect. 19 2
736 14.70 humidity 90.0 720 < th dose independent rect. 7 2
737 14.70 wind 1.0 10 > th dose independent rect. 4 3
742 14.70 temperature 30.0 720 < th dose independent rect. 17 4
744 14.70 humidity 50.0 720 > th dose independent rect. 17 4
758 14.70 temperature 25.0 10 > th dose independent rect. 20 11
759 14.70 temperature 30.0 720 < th dose independent rect. 18 11
761 14.70 atmosphere 995.0 90 > th dose independent rect. 7 12
764 14.70 precipitation 0.1 720 < th dose independent rect. 23 18
765 14.70 precipitation 0.1 720 < th dose independent rect. 21 20
766 14.70 wind 5.0 30 < th dose dependent rect. 6 1
787 14.70 temperature 10.0 270 > th dose dependent rect. 5 12
792 14.70 precipitation 0.1 720 < th dose dependent rect. 23 18
800 14.70 precipitation 0.1 720 < th dose dependent rect. 21 20
805 14.71 wind 1.0 720 > th dose independent rect. 4 1
810 14.71 temperature 10.0 30 > th dose independent rect. 6 1
813 14.71 temperature 30.0 30 < th dose independent rect. 6 1
814 14.71 humidity 50.0 30 > th dose independent rect. 6 1
819 14.71 atmosphere 995.0 30 > th dose independent rect. 6 1
824 14.71 precipitation 0.1 30 < th dose independent rect. 6 1
828 14.71 temperature 10.0 720 > th dose independent rect. 19 2
829 14.71 temperature 30.0 720 < th dose independent rect. 19 2
831 14.71 humidity 50.0 720 > th dose independent rect. 19 2
834 14.71 atmosphere 995.0 720 > th dose independent rect. 19 2
835 14.71 atmosphere 1015.0 720 < th dose independent rect. 19 2
837 14.71 radiation 1.0 720 < th dose independent rect. 19 2
842 14.71 precipitation 0.1 720 < th dose independent rect. 7 2
843 14.71 wind 9.0 4320 < th dose independent rect. 5 3
846 14.71 wind 9.0 720 < th dose independent rect. 17 4
847 14.71 precipitation 0.1 720 < th dose independent rect. 5 4
848 14.71 precipitation 0.1 720 < th dose independent rect. 17 4
850 14.71 humidity 50.0 720 > th dose independent rect. 17 6
851 14.71 precipitation 0.1 720 < th dose independent rect. 5 6
853 14.71 temperature 25.0 10 > th dose independent rect. 23 8
854 14.71 wind 9.0 720 < th dose independent rect. 19 10
856 14.71 temperature 10.0 720 > th dose independent rect. 19 10
858 14.71 humidity 50.0 720 > th dose independent rect. 19 10
859 14.71 atmosphere 995.0 720 > th dose independent rect. 19 10
860 14.71 atmosphere 1015.0 720 < th dose independent rect. 7 10
861 14.71 radiation 1.0 720 < th dose independent rect. 19 10
869 14.71 wind 7.0 90 < th dose independent rect. 19 12
871 14.71 temperature 15.0 270 > th dose independent rect. 5 12
874 14.71 temperature 10.0 90 > th dose independent rect. 19 12
875 14.71 temperature 30.0 90 < th dose independent rect. 19 12
876 14.71 humidity 50.0 90 > th dose independent rect. 19 12
878 14.71 atmosphere 995.0 90 > th dose independent rect. 19 12
880 14.71 radiation 30.0 90 < th dose independent rect. 19 12
882 14.71 precipitation 0.1 90 < th dose independent rect. 7 12
883 14.71 precipitation 0.1 90 < th dose independent rect. 19 12
888 14.71 wind 9.0 720 < th dose independent rect. 17 14
889 14.71 temperature 10.0 720 > th dose independent rect. 5 14
890 14.71 temperature 10.0 720 > th dose independent rect. 17 14
891 14.71 atmosphere 1015.0 720 < th dose independent rect. 5 14
892 14.71 radiation 30.0 720 < th dose independent rect. 17 14
895 14.71 temperature 15.0 720 > th dose independent rect. 13 20
896 14.71 temperature 10.0 720 > th dose independent rect. 21 22
897 14.71 temperature 10.0 30 > th dose independent rect. 7 23
903 14.71 precipitation 0.1 30 < th dose dependent rect. 6 1
908 14.71 radiation 1.0 720 < th dose dependent rect. 19 2
913 14.71 precipitation 0.1 720 < th dose dependent rect. 7 2
914 14.71 wind 1.0 720 < th dose dependent rect. 8 3
921 14.71 radiation 20.0 720 < th dose dependent rect. 17 4
924 14.71 precipitation 0.1 720 < th dose dependent rect. 5 4
925 14.71 precipitation 0.1 720 < th dose dependent rect. 17 4
931 14.71 precipitation 0.1 720 < th dose dependent rect. 5 6
937 14.71 radiation 1.0 720 < th dose dependent rect. 19 10
947 14.71 radiation 40.0 90 < th dose dependent rect. 19 12
948 14.71 precipitation 0.1 90 < th dose dependent rect. 7 12
949 14.71 precipitation 0.1 90 < th dose dependent rect. 19 12
952 14.71 radiation 10.0 270 < th dose dependent rect. 15 14
953 14.71 radiation 40.0 720 < th dose dependent rect. 17 14
960 14.72 wind 1.0 720 < th dose independent rect. 8 1
980 14.72 wind 7.0 720 < th dose independent rect. 5 4
981 14.72 temperature 10.0 720 > th dose independent rect. 17 4
984 14.72 humidity 60.0 720 > th dose independent rect. 5 4
986 14.72 radiation 30.0 720 < th dose independent rect. 17 4
988 14.72 wind 9.0 720 < th dose independent rect. 5 6
991 14.72 precipitation 0.1 720 < th dose independent rect. 17 6
996 14.72 wind 1.0 10 > th dose independent rect. 4 12
1000 14.72 wind 9.0 270 < th dose independent rect. 5 12