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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0247600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0407) R2 : 0.00314
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.103 (0.0857) R2dN8 : 0.00405 R2N8 : 0.00314
σ : 0.766
deviance : 269.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.94 0.72 3.02 0.231 0.267 1.48 0.301 2.99 0.195 10.4 77.67 1393 21.1 0.599
245.57 0.73 3.02 0.228 0.266 1.47 0.366 -- 0.191 9.98 77.24 1360 21 0.608
235.09 0.714 3.02 0.229 0.265 1.59 -- 3.28 0.179 10.1 77.22 1426 21 0.584
245.28 0.729 3.01 0.233 0.286 1.23 -- -- 0.16 9.12 77.52 1489 21.1 0.592
239.06 0.72 3.02 0.258 -- 1.81 -- 3.77 0.209 -- 76.92 1433 21 0.635
263.9 0.762 3.02 0.161 0.282 -- 0.273 -- 0.121 9.97 -- -- -- --
264.19 0.761 3.02 0.171 0.281 -- -- -- 0.121 9.9 -- -- -- --
248.94 0.735 3.01 0.243 -- 1.22 -- -- 0.177 -- 77.33 1484 21 0.65
246.95 0.732 3.01 -- 0.283 1.15 -- -- 0.165 9.72 77.27 1489 21 0.65
268.92 0.766 3.03 0.168 -- -- -- -- 0.121 -- -- -- -- --
264.96 0.761 3.03 -- 0.28 -- -- -- 0.102 9.86 -- -- -- --
250.85 0.738 3.01 -- -- 1.13 -- -- 0.177 -- 77.53 1483 21 0.663
269.66 0.766 3.04 -- -- -- -- -- 0.103 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.58 humidity 80.0 1440 < th dose dependent rect. 21 1
2 243.97 temperature 20.0 270 < th dose independent rect. 7 1
6 246.87 humidity 80.0 1440 < th dose dependent rect. 6 1
7 247.56 humidity 80.0 1440 < th dose dependent rect. 20 11
8 247.72 humidity 80.0 270 < th dose dependent rect. 6 1
18 248.68 humidity 80.0 270 < th dose independent rect. 6 1
20 248.75 humidity 80.0 1440 < th dose independent rect. 5 2
27 249.13 humidity 80.0 1440 < th dose independent rect. 21 10
28 249.13 temperature 20.0 90 < th dose dependent rect. 8 1
36 249.49 temperature 20.0 270 < th dose independent rect. 7 12
37 249.50 wind 9.0 90 > th dose independent rect. 15 1
39 249.50 wind 9.0 90 > th dose dependent rect. 15 1
41 249.51 wind 9.0 10 > th dose independent rect. 15 1
49 249.51 wind 9.0 10 > th dose dependent rect. 15 1
64 250.07 humidity 90.0 1440 < th dose dependent rect. 1 1
67 250.15 humidity 80.0 720 > th dose independent rect. 22 9
70 250.22 humidity 80.0 1440 > th dose independent rect. 5 2
72 250.26 humidity 80.0 720 < th dose independent rect. 24 7
89 250.49 humidity 80.0 1440 > th dose independent rect. 1 6
102 250.69 humidity 80.0 720 < th dose dependent rect. 1 6
185 251.85 temperature 20.0 1440 > th dose independent rect. 17 2
194 251.94 temperature 20.0 1440 > th dose independent rect. 15 4
214 252.06 temperature 20.0 1440 < th dose independent rect. 18 1
215 252.07 humidity 80.0 1440 > th dose independent rect. 1 1
220 252.08 humidity 80.0 720 < th dose independent rect. 1 1
253 252.30 temperature 20.0 1440 > th dose independent rect. 7 13
263 252.37 humidity 80.0 720 < th dose independent rect. 22 1
279 252.44 radiation 10.0 1440 > th dose independent rect. 17 1
364 253.10 temperature 20.0 1440 < th dose independent rect. 7 13
382 253.28 atmosphere 1005.0 10 < th dose dependent rect. 6 1
388 253.30 temperature 20.0 90 < th dose dependent rect. 6 15
393 253.36 temperature 20.0 270 < th dose independent sin 23 NA
417 253.50 humidity 80.0 720 < th dose independent sin 9 NA
435 253.66 temperature 20.0 10 < th dose independent rect. 6 6
439 253.67 wind 7.0 10 > th dose dependent rect. 4 6
441 253.70 radiation 10.0 90 < th dose dependent rect. 9 1
445 253.72 temperature 20.0 10 < th dose independent rect. 6 9
446 253.72 temperature 20.0 10 < th dose independent rect. 6 13
456 253.77 temperature 20.0 10 < th dose independent rect. 6 2
469 253.84 radiation 40.0 10 > th dose dependent rect. 12 1
483 253.93 wind 9.0 30 < th dose independent rect. 13 23
485 253.95 atmosphere 1005.0 90 > th dose dependent rect. 12 1
506 254.06 radiation 10.0 90 < th dose dependent rect. 8 4
507 254.07 humidity 80.0 720 > th dose independent sin 9 NA
513 254.09 wind 7.0 10 > th dose dependent rect. 9 1
530 254.18 temperature 20.0 90 > th dose independent sin 23 NA
551 254.27 atmosphere 1000.0 30 > th dose independent rect. 13 23
561 254.33 radiation 40.0 30 > th dose independent rect. 12 1
576 254.36 temperature 20.0 90 < th dose dependent rect. 7 12
577 254.37 temperature 10.0 1440 > th dose independent rect. 13 1
581 254.37 atmosphere 995.0 1440 > th dose independent rect. 13 1
584 254.37 radiation 20.0 30 > th dose independent rect. 12 1
592 254.37 temperature 10.0 1440 > th dose independent rect. 14 23
613 254.41 wind 7.0 30 < th dose dependent rect. 12 1
614 254.42 humidity 80.0 1440 > th dose independent rect. 22 1
635 254.47 humidity 80.0 30 < th dose independent rect. 12 1
648 254.49 temperature 20.0 30 < th dose dependent rect. 6 8
650 254.50 temperature 20.0 10 < th dose independent rect. 8 7
653 254.51 temperature 20.0 1440 > th dose independent rect. 7 1
656 254.52 atmosphere 1000.0 30 > th dose independent rect. 12 1
668 254.56 temperature 20.0 30 < th dose dependent rect. 6 6
678 254.60 wind 5.0 30 < th dose independent rect. 12 1
698 254.64 temperature 20.0 30 < th dose dependent rect. 6 2
704 254.66 humidity 50.0 30 > th dose independent rect. 12 1
712 254.67 temperature 15.0 30 > th dose independent rect. 13 23
714 254.67 humidity 90.0 30 < th dose dependent rect. 12 1
718 254.69 wind 1.0 30 > th dose independent rect. 12 1
719 254.69 temperature 20.0 30 > th dose independent rect. 12 1
725 254.71 temperature 30.0 10 > th dose independent rect. 12 1
731 254.71 temperature 10.0 30 > th dose dependent rect. 12 1
733 254.71 temperature 25.0 30 > th dose dependent rect. 12 1
742 254.73 temperature 10.0 30 > th dose independent rect. 12 1
746 254.73 atmosphere 1015.0 30 < th dose independent rect. 12 1
748 254.73 precipitation 0.1 30 < th dose independent rect. 12 1
750 254.73 precipitation 0.1 30 < th dose dependent rect. 12 1
780 254.76 wind 5.0 10 > th dose independent rect. 8 1
782 254.76 temperature 20.0 10 < th dose independent rect. 8 11
839 254.88 humidity 50.0 30 > th dose dependent rect. 12 1
843 254.89 temperature 30.0 30 < th dose independent rect. 12 1
888 254.99 wind 1.0 30 > th dose dependent rect. 12 1
895 255.02 atmosphere 1015.0 30 < th dose dependent rect. 12 1
911 255.08 precipitation 0.1 30 < th dose independent rect. 13 23
914 255.08 precipitation 0.1 30 < th dose dependent rect. 13 23
937 255.16 temperature 20.0 90 < th dose independent rect. 5 18
947 255.21 wind 3.0 270 > th dose dependent rect. 5 2
966 255.30 temperature 20.0 1440 > th dose independent sin 22 NA