Os02g0247500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0247500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.93 | 0.596 | 4.3 | 0.386 | 1.38 | -0.668 | -0.324 | -0.138 | -0.063 | 8.13 | 21.86 | 23 | -- | -- |
| 161 | 0.591 | 4.3 | 0.384 | 1.38 | -0.671 | -0.395 | -- | -0.0623 | 8.14 | 21.85 | 22 | -- | -- |
| 161.14 | 0.591 | 4.3 | 0.378 | 1.38 | -0.668 | -- | -0.256 | -0.0624 | 8.13 | 21.93 | 22 | -- | -- |
| 161.44 | 0.592 | 4.3 | 0.375 | 1.38 | -0.672 | -- | -- | -0.0607 | 8.12 | 21.94 | 22 | -- | -- |
| 253.88 | 0.742 | 4.34 | 0.348 | -- | -0.348 | -- | -0.349 | -0.0656 | -- | 28.47 | 25 | -- | -- |
| 177.45 | 0.624 | 4.31 | 0.317 | 1.26 | -- | -0.339 | -- | -0.0941 | 6.83 | -- | -- | -- | -- |
| 177.73 | 0.624 | 4.31 | 0.31 | 1.26 | -- | -- | -- | -0.0934 | 6.8 | -- | -- | -- | -- |
| 254.04 | 0.742 | 4.34 | 0.315 | -- | -0.373 | -- | -- | -0.0637 | -- | 30 | 31 | -- | -- |
| 164.93 | 0.598 | 4.3 | -- | 1.37 | -0.659 | -- | -- | -0.104 | 8.03 | 22.32 | 22 | -- | -- |
| 260.61 | 0.754 | 4.34 | 0.338 | -- | -- | -- | -- | -0.069 | -- | -- | -- | -- | -- |
| 180.27 | 0.628 | 4.32 | -- | 1.26 | -- | -- | -- | -0.128 | 6.79 | -- | -- | -- | -- |
| 213.29 | 0.68 | 4.29 | -- | -- | -1.1 | -- | -- | 0.168 | -- | 28.52 | 746 | -- | -- |
| 263.63 | 0.758 | 4.34 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.16 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 3 | 160.26 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 5 | 160.39 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 6 | 160.46 | radiation | 20 | 270 | < th | dose dependent | sin | 3 | NA |
| 22 | 161.12 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 8 |
| 35 | 161.19 | radiation | 10 | 270 | > th | dose independent | sin | 5 | NA |
| 39 | 161.27 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 61 | 161.52 | radiation | 20 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 65 | 161.64 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 16 |
| 66 | 161.64 | radiation | 40 | 90 | > th | dose independent | rect. | 12 | 23 |
| 68 | 161.70 | radiation | 30 | 90 | < th | dose independent | rect. | 11 | 22 |
| 90 | 162.00 | radiation | 20 | 30 | > th | dose independent | rect. | 9 | 7 |
| 92 | 162.03 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 16 |
| 114 | 162.08 | radiation | 40 | 90 | < th | dose dependent | sin | 1 | NA |
| 140 | 162.21 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 16 |
| 203 | 162.70 | radiation | 40 | 90 | > th | dose independent | sin | 12 | NA |
| 205 | 162.73 | radiation | 20 | 30 | > th | dose independent | sin | 1 | NA |
| 225 | 162.90 | radiation | 20 | 30 | > th | dose independent | rect. | 16 | 23 |
| 226 | 162.91 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 274 | 162.98 | radiation | 40 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 280 | 163.03 | radiation | 20 | 30 | > th | dose independent | no | NA | NA |
| 386 | 163.03 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 388 | 163.04 | radiation | 10 | 90 | < th | dose independent | sin | 23 | NA |
| 406 | 163.14 | wind | 1 | 270 | > th | dose independent | rect. | 15 | 15 |
| 410 | 163.16 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 19 |
| 447 | 163.30 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 454 | 163.34 | radiation | 20 | 30 | < th | dose independent | rect. | 13 | 23 |
| 456 | 163.36 | radiation | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 461 | 163.38 | radiation | 20 | 30 | < th | dose independent | no | NA | NA |
| 492 | 163.50 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 493 | 163.51 | radiation | 10 | 270 | < th | dose independent | sin | 2 | NA |
| 507 | 163.54 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 8 |
| 592 | 163.89 | radiation | 10 | 270 | < th | dose independent | rect. | 9 | 9 |
| 593 | 163.89 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 630 | 163.93 | humidity | 70 | 10 | > th | dose independent | sin | 5 | NA |
| 634 | 163.94 | radiation | 40 | 90 | > th | dose independent | rect. | 14 | 20 |
| 637 | 163.95 | radiation | 10 | 270 | < th | dose independent | sin | 6 | NA |
| 665 | 164.00 | radiation | 40 | 90 | < th | dose independent | sin | 12 | NA |
| 818 | 164.08 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 823 | 164.10 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 844 | 164.13 | radiation | 20 | 30 | < th | dose independent | rect. | 2 | 23 |
| 845 | 164.13 | radiation | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 866 | 164.18 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 903 | 164.25 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 926 | 164.34 | radiation | 30 | 90 | > th | dose dependent | sin | 12 | NA |
| 974 | 164.41 | radiation | 20 | 10 | < th | dose independent | rect. | 2 | 19 |
| 988 | 164.48 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 20 |