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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0247000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.019) R2 : 0.00206
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0388 (0.04) R2dN8 : 0.00266 R2N8 : 0.00206
σ : 0.358
deviance : 58.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.32 0.346 3.2 1.08 0.115 0.582 -0.252 -4.36 0.0302 6.99 30 1374 -- --
56.54 0.353 3.3 0.157 0.145 0.121 -0.169 -- 0.00405 8.56 21.7 4025 -- --
54.48 0.344 3.2 1.08 0.115 0.584 -- -4.38 0.0321 7.36 30 1374 -- --
54.96 0.345 3.29 0.213 0.113 0.228 -- -- 0.0836 6.54 23.61 900 -- --
55.17 0.346 3.2 1.12 -- 0.594 -- -4.48 0.035 -- 29.91 1402 -- --
57.29 0.355 3.31 0.12 0.13 -- -0.236 -- -0.0284 7.45 -- -- -- --
57.44 0.355 3.31 0.115 0.129 -- -- -- -0.0278 7.72 -- -- -- --
55.49 0.347 3.29 0.209 -- 0.23 -- -- 0.0804 -- 23.65 792 -- --
55.93 0.348 3.3 -- 0.114 0.187 -- -- 0.0374 6.49 23.66 903 -- --
58.33 0.357 3.31 0.116 -- -- -- -- -0.0259 -- -- -- -- --
57.78 0.356 3.31 -- 0.13 -- -- -- -0.0405 7.66 -- -- -- --
56.54 0.35 3.3 -- -- 0.194 -- -- 0.0416 -- 23.63 792 -- --
58.69 0.358 3.32 -- -- -- -- -- -0.0388 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.67 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 51.68 atmosphere 1005.0 10 > th dose dependent rect. 2 2
3 51.81 atmosphere 1000.0 30 > th dose independent rect. 3 23
8 52.11 radiation 1.0 43200 < th dose dependent rect. 3 1
9 52.27 atmosphere 1010.0 30 < th dose dependent rect. 2 1
10 52.39 wind 3.0 10 < th dose independent rect. 2 1
13 52.41 temperature 15.0 30 > th dose independent rect. 3 23
16 52.42 wind 3.0 10 < th dose dependent rect. 2 1
19 52.42 temperature 30.0 30 < th dose dependent rect. 2 1
23 52.43 temperature 25.0 10 < th dose independent rect. 2 1
30 52.45 temperature 10.0 30 > th dose independent rect. 2 1
33 52.45 humidity 50.0 30 > th dose independent rect. 2 1
36 52.45 atmosphere 995.0 30 > th dose independent rect. 2 1
37 52.45 atmosphere 1010.0 30 < th dose independent rect. 2 1
39 52.45 radiation 1.0 30 < th dose independent rect. 2 1
44 52.45 precipitation 0.1 30 < th dose independent rect. 2 1
51 52.45 radiation 1.0 30 < th dose dependent rect. 2 1
56 52.45 precipitation 0.1 30 < th dose dependent rect. 2 1
59 52.46 humidity 50.0 30 > th dose dependent rect. 2 1
79 52.47 temperature 10.0 30 > th dose dependent rect. 2 1
88 52.48 wind 1.0 30 > th dose independent rect. 2 1
114 52.62 wind 9.0 30 < th dose independent rect. 3 23
119 52.67 radiation 10.0 270 < th dose dependent rect. 11 1
123 52.74 precipitation 0.1 30 < th dose independent rect. 3 23
124 52.74 precipitation 0.1 30 < th dose dependent rect. 3 23
134 52.90 wind 5.0 14400 < th dose independent rect. 11 1
149 52.99 wind 9.0 1440 < th dose independent rect. 3 1
150 52.99 temperature 10.0 1440 > th dose independent rect. 3 1
153 52.99 temperature 30.0 1440 < th dose independent rect. 3 1
157 52.99 humidity 50.0 1440 > th dose independent rect. 3 1
166 52.99 atmosphere 995.0 1440 > th dose independent rect. 3 1
167 52.99 radiation 1.0 1440 < th dose independent rect. 3 1
187 52.99 temperature 10.0 1440 > th dose independent rect. 4 23
203 53.17 precipitation 0.1 1440 > th dose independent rect. 12 1
205 53.17 precipitation 0.1 1440 > th dose dependent rect. 12 1
207 53.20 wind 5.0 14400 > th dose independent rect. 11 1
210 53.24 wind 7.0 14400 < th dose independent rect. 9 1
214 53.25 humidity 80.0 14400 < th dose dependent rect. 3 6
222 53.34 wind 3.0 14400 > th dose dependent rect. 11 1
228 53.41 temperature 20.0 720 > th dose dependent rect. 3 1
235 53.51 humidity 90.0 90 < th dose independent rect. 2 1
238 53.55 wind 7.0 14400 < th dose dependent rect. 10 2
240 53.57 humidity 70.0 14400 > th dose independent rect. 8 1
268 53.61 humidity 50.0 30 > th dose independent rect. 3 23
270 53.63 wind 5.0 14400 < th dose independent rect. 10 5
272 53.64 wind 7.0 14400 > th dose independent rect. 9 1
273 53.64 wind 1.0 1440 < th dose independent rect. 17 1
275 53.64 wind 5.0 14400 > th dose independent rect. 10 5
277 53.65 humidity 70.0 14400 < th dose independent rect. 8 1
279 53.68 humidity 70.0 14400 > th dose independent rect. 4 5
280 53.68 humidity 70.0 14400 > th dose independent rect. 21 12
282 53.69 humidity 70.0 14400 > th dose independent rect. 6 3
296 53.71 wind 1.0 14400 < th dose dependent rect. 6 1
298 53.72 temperature 10.0 30 > th dose dependent rect. 3 23
300 53.74 wind 1.0 1440 > th dose independent rect. 17 1
302 53.76 wind 1.0 1440 < th dose dependent rect. 17 1
309 53.84 humidity 70.0 14400 < th dose independent rect. 6 3
321 53.85 precipitation 0.1 14400 > th dose independent rect. 24 9
323 53.86 precipitation 0.1 14400 < th dose independent rect. 24 9
325 53.86 precipitation 0.1 14400 < th dose dependent rect. 24 9
333 53.90 precipitation 0.1 14400 > th dose dependent rect. 24 9
369 54.01 wind 1.0 14400 < th dose independent rect. 6 1
382 54.03 atmosphere 995.0 720 > th dose independent rect. 23 16
385 54.04 humidity 70.0 1440 < th dose independent rect. 10 1
388 54.05 atmosphere 1000.0 720 > th dose independent rect. 3 8
413 54.10 temperature 30.0 1440 < th dose independent rect. 14 21
414 54.10 wind 7.0 14400 > th dose dependent rect. 9 1
427 54.13 humidity 50.0 4320 > th dose dependent rect. 3 6
436 54.15 temperature 30.0 1440 > th dose independent rect. 14 21
437 54.15 wind 1.0 14400 < th dose dependent rect. 4 7
442 54.16 wind 3.0 14400 > th dose dependent rect. 9 6
444 54.17 humidity 60.0 43200 < th dose independent rect. 11 1
448 54.18 humidity 80.0 4320 < th dose independent rect. 3 10
452 54.18 wind 1.0 14400 < th dose dependent rect. 4 4
459 54.20 humidity 70.0 1440 > th dose independent rect. 10 1
465 54.21 humidity 80.0 4320 > th dose independent rect. 3 10
469 54.22 wind 1.0 14400 < th dose independent rect. 4 7
480 54.23 humidity 50.0 4320 > th dose dependent rect. 23 13
490 54.24 temperature 25.0 720 > th dose dependent rect. 3 5
503 54.26 wind 1.0 14400 > th dose independent rect. 4 7
511 54.26 humidity 50.0 4320 > th dose dependent rect. 2 10
519 54.27 humidity 90.0 4320 < th dose dependent rect. 23 13
522 54.28 humidity 50.0 4320 < th dose independent rect. 12 5
523 54.28 temperature 30.0 1440 < th dose independent rect. 14 15
532 54.29 temperature 25.0 720 > th dose independent rect. 3 6
556 54.30 humidity 50.0 4320 < th dose independent rect. 15 2
558 54.30 temperature 30.0 1440 < th dose independent rect. 14 7
568 54.31 wind 1.0 14400 < th dose independent rect. 4 4
569 54.31 temperature 30.0 1440 < th dose independent rect. 14 5
576 54.31 temperature 30.0 1440 < th dose independent rect. 18 22
584 54.32 temperature 30.0 1440 < th dose independent sin 14 NA
614 54.33 temperature 10.0 720 > th dose independent rect. 15 8
618 54.33 temperature 10.0 720 > th dose independent rect. 23 16
638 54.34 temperature 30.0 1440 > th dose independent rect. 14 5
639 54.34 humidity 50.0 4320 > th dose independent rect. 12 5
646 54.34 temperature 30.0 1440 < th dose independent rect. 12 9
659 54.34 temperature 30.0 1440 < th dose independent rect. 3 13
670 54.34 temperature 30.0 1440 < th dose independent rect. 3 16
676 54.34 humidity 80.0 4320 < th dose independent rect. 20 17
694 54.34 temperature 30.0 1440 < th dose independent rect. 8 21
712 54.35 temperature 30.0 1440 < th dose independent no NA NA
715 54.35 wind 1.0 14400 > th dose independent rect. 4 4
734 54.35 temperature 30.0 1440 < th dose independent rect. 8 14
739 54.35 temperature 30.0 1440 < th dose independent rect. 23 17
748 54.35 temperature 30.0 1440 < th dose independent rect. 20 20
749 54.35 temperature 30.0 1440 < th dose independent rect. 23 20
769 54.35 temperature 30.0 1440 < th dose independent rect. 20 23
781 54.36 temperature 10.0 720 > th dose independent rect. 3 8
782 54.36 temperature 30.0 1440 < th dose independent rect. 8 8
784 54.36 temperature 30.0 1440 < th dose independent rect. 8 11
805 54.36 temperature 10.0 720 > th dose independent rect. 11 16
894 54.37 humidity 90.0 4320 < th dose dependent sin 6 NA
896 54.37 wind 1.0 14400 < th dose dependent rect. 6 5
903 54.38 humidity 90.0 4320 > th dose independent rect. 3 1
955 54.39 humidity 50.0 4320 > th dose dependent sin 6 NA
956 54.39 humidity 60.0 4320 < th dose dependent rect. 13 1
970 54.40 humidity 80.0 4320 < th dose independent sin 5 NA
972 54.40 humidity 50.0 4320 > th dose independent rect. 14 1
976 54.40 precipitation 0.1 720 < th dose independent rect. 15 8
989 54.40 precipitation 0.1 720 < th dose dependent rect. 15 8