Os02g0244700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0244700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (CP21).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.58 | 0.284 | 13.5 | 1.29 | 0.755 | -0.527 | 0.904 | 0.523 | 0.7 | 20.9 | 10.01 | 32951 | -- | -- |
| 36.83 | 0.283 | 13.5 | 1.23 | 0.764 | -0.482 | 0.958 | -- | 0.691 | 20.7 | 10 | 32026 | -- | -- |
| 39.26 | 0.292 | 13.5 | 1.29 | 0.757 | -0.53 | -- | 0.644 | 0.704 | 20.7 | 10 | 32781 | -- | -- |
| 39.43 | 0.292 | 13.5 | 1.21 | 0.746 | -0.505 | -- | -- | 0.682 | 20.6 | 10.01 | 32026 | -- | -- |
| 64.99 | 0.378 | 13.5 | 1.05 | -- | -0.297 | -- | -0.515 | 0.463 | -- | 10 | 32781 | -- | -- |
| 42.21 | 0.305 | 13.5 | 1.04 | 0.74 | -- | 0.9 | -- | 0.478 | 20.8 | -- | -- | -- | -- |
| 44.87 | 0.314 | 13.5 | 1.01 | 0.74 | -- | -- | -- | 0.479 | 20.6 | -- | -- | -- | -- |
| 66.6 | 0.382 | 13.5 | 1.03 | -- | -0.303 | -- | -- | 0.463 | -- | 10 | 32781 | -- | -- |
| 55.83 | 0.348 | 13.5 | -- | 0.685 | -0.765 | -- | -- | 0.347 | 20.5 | 9.4 | 42101 | -- | -- |
| 75.8 | 0.407 | 13.5 | 1.01 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 71.69 | 0.396 | 13.5 | -- | 0.738 | -- | -- | -- | 0.366 | 20.8 | -- | -- | -- | -- |
| 84.34 | 0.428 | 13.5 | -- | -- | -0.679 | -- | -- | 0.303 | -- | 49.55 | 31598 | -- | -- |
| 102.53 | 0.473 | 13.5 | -- | -- | -- | -- | -- | 0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.28 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 34.38 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 17 | 35.10 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 18 | 35.10 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 23 | 35.26 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 26 | 35.33 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 34 | 35.42 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 102 | 35.90 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 105 | 35.91 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 106 | 35.91 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 107 | 35.91 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 116 | 35.91 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 206 | 36.10 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 231 | 36.15 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 14 |
| 232 | 36.15 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 233 | 36.15 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 18 |
| 245 | 36.17 | humidity | 80.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 302 | 36.25 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 18 |
| 314 | 36.27 | humidity | 80.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 325 | 36.28 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 361 | 36.32 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 370 | 36.33 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 410 | 36.36 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 464 | 36.38 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 466 | 36.38 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 467 | 36.38 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 472 | 36.39 | humidity | 80.0 | 43200 | > th | dose independent | no | NA | NA |
| 489 | 36.40 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 570 | 36.44 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 594 | 36.46 | humidity | 80.0 | 43200 | < th | dose independent | no | NA | NA |
| 626 | 36.48 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 683 | 36.52 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 723 | 36.53 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 724 | 36.53 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 778 | 36.57 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 783 | 36.58 | radiation | 10.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 818 | 36.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 843 | 36.62 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 845 | 36.62 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 885 | 36.63 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |