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Os02g0241100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0279) R2 : 0.774
β1 : 3.6 (0.102) R2dD : 0.642 R2D : 0.474
β2 : 1.05 (0.0726) R2dC : 0.105 R2C : 0.0447
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.06 (0.0594) R2dN8 : 0.21 R2N8 : 0.0333
σ : 0.524
deviance : 124.99
__
_____
C
peak time of C : 18.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.93 0.455 10.6 0.665 1.01 -2.44 1.3 16.1 0.904 18.2 29.8 4015 -- --
107.55 0.483 10.5 2.26 1.05 -1.52 1.14 -- 0.441 19.2 20.5 8067 -- --
98.08 0.461 10.6 0.655 1.01 -2.43 -- 16.1 0.907 18.2 29.81 4012 -- --
97.72 0.46 10.4 2.23 1.08 -1.41 -- -- 0.562 18.6 20 20123 -- --
151.05 0.572 10.6 0.53 -- -2.51 -- 16.8 0.886 -- 29.8 3950 -- --
121.13 0.516 10.3 3.61 1.05 -- 1.24 -- 1.05 18.5 -- -- -- --
124.99 0.524 10.3 3.6 1.05 -- -- -- 1.06 18.5 -- -- -- --
155.28 0.58 10.4 2.27 -- -1.4 -- -- 0.551 -- 19.86 20849 -- --
128.45 0.528 10.6 -- 1.01 -2.54 -- -- 0.126 18.3 19.1 47399 -- --
182.8 0.632 10.3 3.57 -- -- -- -- 1.03 -- -- -- -- --
466.03 1.01 10.4 -- 1.01 -- -- -- 0.655 18.7 -- -- -- --
177.63 0.621 10.5 -- -- -2.91 -- -- -0.07 -- 18.59 47520 -- --
519.14 1.06 10.4 -- -- -- -- -- 0.638 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.03 wind 3.0 43200 < th dose dependent rect. 8 1
2 92.14 temperature 20.0 14400 > th dose independent rect. 8 1
3 92.17 wind 1.0 43200 < th dose dependent rect. 23 3
4 92.21 wind 1.0 43200 < th dose dependent rect. 1 1
5 92.62 temperature 20.0 14400 < th dose independent rect. 8 1
7 92.91 wind 7.0 14400 < th dose independent rect. 3 8
11 93.12 temperature 25.0 14400 > th dose independent rect. 11 1
13 93.16 wind 1.0 4320 < th dose independent rect. 5 1
16 93.34 wind 7.0 14400 > th dose independent rect. 3 8
18 93.40 wind 7.0 14400 < th dose independent rect. 23 12
20 93.43 temperature 25.0 14400 < th dose independent rect. 11 1
23 93.43 wind 7.0 14400 > th dose dependent rect. 4 7
24 93.48 precipitation 0.1 43200 < th dose independent rect. 12 1
25 93.48 precipitation 0.1 43200 < th dose dependent rect. 12 1
27 93.52 radiation 1.0 43200 < th dose dependent rect. 19 10
29 93.55 wind 7.0 14400 > th dose independent rect. 23 12
30 93.56 radiation 1.0 43200 < th dose dependent rect. 23 6
34 93.65 temperature 20.0 14400 < th dose dependent rect. 22 1
36 93.71 temperature 20.0 14400 < th dose independent rect. 17 1
38 93.80 temperature 20.0 14400 < th dose dependent rect. 17 7
49 93.99 wind 1.0 43200 < th dose dependent rect. 19 17
53 94.03 wind 1.0 4320 > th dose independent rect. 5 1
58 94.13 humidity 90.0 14400 > th dose dependent rect. 2 15
61 94.14 temperature 20.0 14400 < th dose dependent rect. 7 1
66 94.17 wind 7.0 14400 > th dose dependent rect. 23 12
90 94.40 humidity 90.0 14400 > th dose dependent rect. 4 12
95 94.43 temperature 20.0 14400 > th dose independent rect. 17 1
96 94.44 temperature 20.0 14400 > th dose independent rect. 6 12
99 94.45 temperature 20.0 14400 < th dose independent rect. 6 13
106 94.49 wind 1.0 43200 < th dose dependent rect. 21 15
129 94.61 temperature 20.0 14400 < th dose dependent rect. 6 18
161 94.76 temperature 20.0 14400 > th dose independent rect. 21 1
175 94.83 temperature 20.0 14400 < th dose dependent rect. 19 1
178 94.83 wind 1.0 43200 < th dose dependent rect. 10 20
179 94.84 precipitation 0.1 43200 > th dose independent rect. 12 1
181 94.84 precipitation 0.1 43200 > th dose dependent rect. 12 1
190 94.88 radiation 1.0 43200 > th dose independent rect. 18 1
234 95.02 temperature 20.0 14400 > th dose independent sin 23 NA
235 95.02 temperature 20.0 14400 < th dose independent sin 23 NA
238 95.02 wind 1.0 43200 < th dose dependent rect. 19 20
245 95.04 temperature 20.0 14400 < th dose dependent sin 19 NA
247 95.05 wind 1.0 43200 > th dose independent rect. 8 1
250 95.06 temperature 20.0 14400 < th dose independent rect. 21 3
253 95.08 temperature 20.0 14400 < th dose independent rect. 6 18
259 95.11 temperature 20.0 14400 < th dose independent rect. 22 1
264 95.13 wind 1.0 43200 < th dose dependent rect. 17 19
265 95.14 temperature 20.0 14400 > th dose independent rect. 6 17
295 95.22 temperature 20.0 14400 > th dose independent rect. 16 19
296 95.23 wind 9.0 43200 > th dose independent rect. 10 4
301 95.24 wind 3.0 43200 < th dose independent rect. 8 2
306 95.24 temperature 20.0 14400 > th dose independent rect. 6 21
325 95.29 temperature 20.0 14400 > th dose independent rect. 20 16
337 95.31 wind 9.0 43200 > th dose independent rect. 9 6
346 95.33 temperature 25.0 14400 < th dose dependent rect. 12 1
350 95.34 precipitation 0.1 43200 < th dose independent rect. 8 5
355 95.34 wind 3.0 43200 < th dose dependent rect. 22 1
356 95.34 precipitation 0.1 43200 < th dose dependent rect. 8 5
367 95.36 temperature 20.0 14400 < th dose independent rect. 6 21
369 95.36 temperature 20.0 14400 > th dose independent rect. 20 22
377 95.37 temperature 20.0 14400 < th dose independent rect. 16 19
380 95.37 humidity 70.0 43200 < th dose dependent rect. 22 10
395 95.39 temperature 20.0 14400 > th dose independent rect. 2 21
398 95.39 humidity 90.0 14400 > th dose dependent sin 3 NA
402 95.40 temperature 20.0 14400 > th dose independent rect. 16 12
404 95.40 temperature 20.0 14400 < th dose independent rect. 21 15
508 95.48 wind 3.0 43200 < th dose independent rect. 21 2
517 95.48 temperature 20.0 14400 < th dose independent rect. 21 21
536 95.50 temperature 20.0 14400 > th dose independent no NA NA
551 95.51 precipitation 0.1 43200 > th dose independent rect. 8 5
563 95.51 precipitation 0.1 43200 > th dose dependent rect. 8 5
570 95.52 temperature 20.0 14400 > th dose independent rect. 2 16
701 95.61 temperature 20.0 14400 > th dose independent sin 12 NA
706 95.61 temperature 20.0 14400 < th dose independent rect. 16 12
718 95.62 temperature 20.0 14400 < th dose independent no NA NA
773 95.65 wind 1.0 43200 < th dose dependent rect. 14 22
778 95.66 temperature 20.0 14400 < th dose independent rect. 20 7
805 95.67 wind 1.0 43200 < th dose dependent rect. 8 22
849 95.70 wind 1.0 43200 < th dose dependent rect. 17 22
981 95.83 humidity 90.0 14400 > th dose dependent rect. 5 2