Os02g0240500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Class III peroxidase GvPx2b (Fragment).
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Os02g0240500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Class III peroxidase GvPx2b (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.75 | 0.599 | 5.94 | 0.396 | 1.71 | -2.34 | 0.674 | 1.11 | -0.678 | 9.94 | 15.92 | 233 | -- | -- |
| 163.58 | 0.596 | 5.96 | 0.246 | 1.74 | -2.46 | 0.741 | -- | -0.725 | 9.97 | 14.54 | 219 | -- | -- |
| 164.43 | 0.597 | 5.94 | 0.455 | 1.71 | -2.33 | -- | 1.28 | -0.662 | 10 | 16.39 | 232 | -- | -- |
| 165.59 | 0.599 | 5.97 | 0.261 | 1.72 | -2.47 | -- | -- | -0.716 | 9.99 | 14.7 | 232 | -- | -- |
| 262.78 | 0.755 | 5.93 | 0.883 | -- | -3.37 | -- | 1.9 | -0.466 | -- | 9.467 | 614 | -- | -- |
| 225.73 | 0.704 | 6.03 | -0.315 | 1.92 | -- | 1.27 | -- | -1.07 | 8.49 | -- | -- | -- | -- |
| 230.81 | 0.711 | 6.03 | -0.274 | 1.92 | -- | -- | -- | -1.07 | 8.55 | -- | -- | -- | -- |
| 261.96 | 0.754 | 5.97 | 0.509 | -- | -3.11 | -- | -- | -0.56 | -- | 16.3 | 611 | -- | -- |
| 167.18 | 0.602 | 5.97 | -- | 1.71 | -2.35 | -- | -- | -0.763 | 9.92 | 14.75 | 232 | -- | -- |
| 436.81 | 0.977 | 6.09 | -0.267 | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
| 232.79 | 0.714 | 6.03 | -- | 1.92 | -- | -- | -- | -1.04 | 8.56 | -- | -- | -- | -- |
| 268.17 | 0.763 | 5.99 | -- | -- | -2.9 | -- | -- | -0.638 | -- | 16.56 | 608 | -- | -- |
| 438.69 | 0.978 | 6.08 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 10 | 157.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 13 | 157.92 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 37 | 160.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 40 | 160.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 45 | 160.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 48 | 161.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 86 | 161.69 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 92 | 161.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 131 | 162.17 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 138 | 162.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 144 | 162.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 158 | 162.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 188 | 162.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 191 | 162.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 192 | 162.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 228 | 163.06 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 249 | 163.18 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 358 | 163.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 419 | 164.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 547 | 164.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 586 | 165.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 618 | 165.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 634 | 165.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 672 | 165.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 741 | 165.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 825 | 166.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 911 | 166.36 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |