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Os02g0240300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Class III peroxidase GvPx2b (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0923) R2 : 0.855
β1 : -11.8 (0.405) R2dD : 0.474 R2D : 0.36
β2 : 7.33 (0.208) R2dC : 0.398 R2C : 0.374
β3 : -6.72 (0.474) R2dE : 0.101 R2E : -0.145
β4 : 5.09 (0.826) R2dD*C : 0.0123 R2D*C : 0.00732
β5 : -5.84 (1.34) R2dD*E : 0.0129 R2D*E : 0.046
γ1 : -1.9 (0.201) R2dN8 : 0.0466 R2N8 : -0.0414
σ : 1.61
deviance : 1172.99
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_____
C
peak time of C : 21.7
E
wheather : temperature
threshold : 19.68
memory length : 4222
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.1
open length of G : 1.25

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1172.99 1.61 12 -11.8 7.33 -6.72 5.09 -5.84 -1.9 21.7 19.68 4222 5.1 1.25
1205.93 1.62 12.2 -12.5 7.29 -5.28 4.55 -- -2.1 21.7 20.6 4208 5.46 0.867
1270.71 1.66 12 -11.9 7.31 -6.62 -- -5.64 -1.88 21.7 19.63 4226 5.15 1.18
1293.73 1.68 12.1 -12.6 7.25 -5.14 -- -- -2.07 21.7 20.93 4203 5.48 0.866
1857.52 2.01 12 -12.4 -- -7.25 -- -3.58 -2.37 -- 60.33 2094 3.9 0.452
1694.09 1.93 11.9 -10.8 7.24 -- 5.15 -- -1.08 21.8 -- -- -- --
1795.79 1.98 11.9 -11 7.22 -- -- -- -1.09 21.8 -- -- -- --
1593.85 1.86 11.8 -12 -- -8.07 -- -- -1.56 -- 74.09 2133 1.45 5.47
4998.91 3.31 11.6 -- 7.17 -1.25 -- -- 0.125 21.7 20.93 4203 5.48 0.866
4907.58 3.27 11.7 -11 -- -- -- -- -1.09 -- -- -- -- --
5005 3.31 11.6 -- 7.2 -- -- -- 0.143 21.7 -- -- -- --
5032.51 3.3 11.4 -- -- -6.28 -- -- 0.111 -- 255.5 2156 1.43 5.1
8077.73 4.2 11.4 -- -- -- -- -- 0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1129.04 humidity 80.0 43200 < th dose independent rect. 18 1
3 1140.92 humidity 80.0 43200 > th dose independent rect. 17 3
4 1142.78 precipitation 0.1 43200 < th dose independent rect. 3 1
5 1142.78 precipitation 0.1 43200 < th dose dependent rect. 3 1
7 1143.88 precipitation 0.1 43200 > th dose independent rect. 3 1
10 1144.39 radiation 10.0 14400 > th dose dependent rect. 5 2
22 1145.20 precipitation 0.1 43200 > th dose dependent rect. 17 4
23 1145.34 radiation 10.0 14400 < th dose independent rect. 18 13
26 1146.64 radiation 10.0 14400 < th dose independent rect. 4 3
27 1146.71 radiation 10.0 14400 < th dose independent rect. 20 11
28 1146.76 radiation 10.0 14400 < th dose independent rect. 22 9
31 1146.85 radiation 10.0 14400 < th dose independent rect. 24 7
49 1160.71 precipitation 0.1 43200 > th dose dependent rect. 13 8
50 1160.76 atmosphere 1015.0 14400 > th dose dependent rect. 23 1
51 1161.28 precipitation 0.1 43200 > th dose dependent rect. 3 1
52 1161.30 humidity 80.0 43200 < th dose dependent rect. 17 1
53 1161.83 precipitation 0.1 43200 > th dose dependent rect. 17 10
54 1162.13 radiation 1.0 43200 < th dose dependent rect. 20 7
59 1163.93 radiation 10.0 14400 < th dose independent rect. 10 22
60 1164.17 precipitation 0.1 43200 > th dose dependent rect. 14 13
64 1164.77 atmosphere 1015.0 43200 < th dose independent rect. 23 1
83 1165.63 atmosphere 1015.0 43200 > th dose independent rect. 22 1
86 1166.14 precipitation 0.1 43200 > th dose dependent rect. 17 7
88 1166.46 precipitation 0.1 43200 > th dose dependent rect. 13 11
89 1166.55 precipitation 0.1 43200 > th dose independent rect. 17 4
94 1167.03 precipitation 0.1 43200 < th dose independent rect. 17 4
95 1167.03 precipitation 0.1 43200 < th dose dependent rect. 17 4
113 1168.06 precipitation 0.1 43200 < th dose independent rect. 17 7
114 1168.06 precipitation 0.1 43200 < th dose dependent rect. 17 7
115 1168.14 precipitation 0.1 43200 > th dose independent rect. 17 7
117 1168.44 radiation 10.0 14400 < th dose independent rect. 17 21
146 1169.25 atmosphere 1015.0 14400 > th dose dependent rect. 19 5
152 1169.58 precipitation 0.1 43200 > th dose dependent sin 16 NA
177 1170.89 precipitation 0.1 43200 > th dose independent rect. 14 10
185 1171.21 precipitation 0.1 43200 > th dose dependent rect. 19 3
190 1171.30 precipitation 0.1 43200 < th dose independent rect. 14 10
191 1171.30 precipitation 0.1 43200 < th dose dependent rect. 14 10
196 1171.44 atmosphere 1015.0 14400 > th dose independent rect. 14 9
212 1171.93 radiation 10.0 14400 > th dose independent rect. 5 2
241 1172.62 precipitation 0.1 43200 > th dose dependent rect. 2 6
247 1172.79 radiation 10.0 14400 < th dose independent rect. 5 9
257 1172.96 radiation 10.0 14400 < th dose independent rect. 24 14
284 1173.24 atmosphere 1015.0 14400 < th dose independent rect. 15 7
295 1173.86 radiation 1.0 14400 < th dose independent rect. 15 3
298 1174.01 atmosphere 1015.0 14400 < th dose independent rect. 17 4
300 1174.01 humidity 70.0 43200 < th dose independent rect. 16 9
306 1174.31 precipitation 0.1 43200 > th dose dependent rect. 13 5
309 1174.32 radiation 1.0 14400 > th dose independent rect. 4 13
333 1174.83 precipitation 0.1 43200 < th dose independent rect. 19 3
335 1174.83 precipitation 0.1 43200 < th dose dependent rect. 19 3
344 1174.97 precipitation 0.1 43200 > th dose independent rect. 19 3
368 1175.29 humidity 70.0 43200 > th dose dependent rect. 17 1
377 1175.47 humidity 70.0 43200 < th dose independent rect. 15 16
379 1175.52 humidity 70.0 43200 < th dose independent rect. 15 14
397 1175.70 precipitation 0.1 43200 < th dose independent rect. 23 1
399 1175.70 precipitation 0.1 43200 < th dose dependent rect. 23 1
409 1176.01 precipitation 0.1 43200 > th dose independent rect. 23 1
410 1176.01 precipitation 0.1 43200 > th dose dependent rect. 23 1
490 1177.89 humidity 70.0 43200 > th dose dependent rect. 16 3
495 1178.01 radiation 10.0 14400 < th dose independent rect. 10 8
498 1178.19 atmosphere 1010.0 14400 > th dose dependent rect. 16 1
502 1178.27 radiation 10.0 14400 < th dose independent rect. 10 15
505 1178.30 radiation 1.0 14400 > th dose independent rect. 16 1
515 1178.38 radiation 10.0 14400 < th dose independent sin 4 NA
528 1178.78 radiation 1.0 14400 < th dose independent rect. 16 1
559 1179.08 radiation 10.0 14400 < th dose independent rect. 5 20
561 1179.08 radiation 10.0 43200 < th dose dependent rect. 18 1
612 1179.16 radiation 10.0 14400 < th dose independent no NA NA
630 1179.19 radiation 30.0 43200 < th dose dependent rect. 18 7
634 1179.24 radiation 10.0 43200 < th dose dependent rect. 18 5
672 1179.89 precipitation 0.1 43200 > th dose independent rect. 2 6
680 1180.02 precipitation 0.1 43200 < th dose independent rect. 2 6
681 1180.02 precipitation 0.1 43200 < th dose dependent rect. 2 6
685 1180.05 radiation 1.0 14400 < th dose independent rect. 15 15
691 1180.19 humidity 70.0 43200 > th dose independent rect. 16 9
701 1180.34 radiation 10.0 14400 < th dose independent rect. 10 5
707 1180.40 precipitation 0.1 43200 > th dose independent rect. 16 2
738 1180.92 humidity 70.0 43200 > th dose independent rect. 15 16
791 1181.79 radiation 10.0 14400 < th dose independent sin 11 NA
793 1181.84 precipitation 0.1 43200 < th dose independent rect. 16 2
795 1181.84 precipitation 0.1 43200 < th dose dependent rect. 16 2
820 1182.29 precipitation 0.1 43200 > th dose independent sin 17 NA
824 1182.37 radiation 40.0 14400 < th dose dependent rect. 4 2
826 1182.43 precipitation 0.1 43200 < th dose independent sin 17 NA
829 1182.43 precipitation 0.1 43200 < th dose dependent sin 17 NA
847 1182.79 wind 1.0 43200 > th dose independent rect. 22 1
891 1183.23 radiation 1.0 14400 > th dose independent rect. 15 20
898 1183.51 radiation 1.0 14400 > th dose independent rect. 15 15
949 1184.30 radiation 40.0 14400 < th dose dependent rect. 20 10
960 1184.43 radiation 40.0 14400 < th dose dependent rect. 18 12
967 1184.54 radiation 40.0 14400 < th dose dependent rect. 22 8
974 1184.57 temperature 20.0 4320 < th dose dependent rect. 5 1
989 1184.75 humidity 70.0 43200 < th dose independent sin 14 NA