Os02g0240100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase 2 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os02g0240100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase 2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 691.94 | 1.24 | 5.12 | -4.78 | 1.47 | 2.5 | -5.87 | 1.03 | -0.943 | 0.545 | 70 | 757 | 16.9 | 3 |
| 692.84 | 1.23 | 5.11 | -4.7 | 1.48 | 2.49 | -4.8 | -- | -0.946 | 0.405 | 69.84 | 763 | 16.9 | 2.93 |
| 720.53 | 1.25 | 5.1 | -4.37 | 1.43 | 2.81 | -- | -3.96 | -0.903 | 22.2 | 68 | 781 | 16.3 | 4.58 |
| 788.58 | 1.31 | 5.11 | -4.49 | 1.49 | 2.54 | -- | -- | -0.939 | 23.6 | 70 | 775 | 16.9 | 2.8 |
| 703.66 | 1.24 | 5.08 | -4.61 | -- | 3.95 | -- | -3.65 | -1.08 | -- | 62.19 | 811 | 14.8 | 5.63 |
| 898.24 | 1.41 | 5.06 | -4.99 | 3.75 | -- | -5.24 | -- | -0.551 | 0.368 | -- | -- | -- | -- |
| 1015.65 | 1.49 | 5.05 | -4.79 | 3.76 | -- | -- | -- | -0.523 | 0.217 | -- | -- | -- | -- |
| 788.61 | 1.31 | 5.1 | -4.53 | -- | 3.95 | -- | -- | -1.06 | -- | 62.12 | 808 | 14.7 | 5.5 |
| 1302.07 | 1.68 | 5.05 | -- | 1.39 | 2.77 | -- | -- | -0.52 | 22.7 | 70.98 | 817 | 17.2 | 2.22 |
| 1907.53 | 2.04 | 4.97 | -4.66 | -- | -- | -- | -- | -0.466 | -- | -- | -- | -- | -- |
| 1619.29 | 1.88 | 4.93 | -- | 3.7 | -- | -- | -- | 0.0103 | 0.148 | -- | -- | -- | -- |
| 1326.67 | 1.7 | 5 | -- | -- | 3.98 | -- | -- | -0.616 | -- | 62.27 | 822 | 14.7 | 5.15 |
| 2481.04 | 2.32 | 4.85 | -- | -- | -- | -- | -- | 0.0517 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 701.75 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 3 | 714.88 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 5 | 718.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 6 | 718.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 7 | 719.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 8 | 719.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 9 | 720.54 | humidity | 60 | 720 | > th | dose independent | rect. | 15 | 6 |
| 14 | 721.45 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 16 | 722.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 20 | 722.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 23 | 722.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 31 | 722.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 33 | 722.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 42 | 722.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 54 | 723.13 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 114 | 724.59 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 151 | 725.21 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 211 | 726.04 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 228 | 726.60 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 261 | 727.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 273 | 727.84 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 276 | 727.93 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 286 | 728.65 | humidity | 60 | 1440 | < th | dose dependent | rect. | 14 | 20 |
| 289 | 728.78 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 308 | 728.89 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 324 | 729.28 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 479 | 732.50 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 491 | 732.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 502 | 733.65 | humidity | 60 | 1440 | < th | dose dependent | sin | 16 | NA |
| 518 | 734.25 | humidity | 70 | 1440 | < th | dose dependent | sin | 13 | NA |
| 580 | 736.68 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 616 | 737.70 | wind | 7 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 629 | 738.09 | humidity | 60 | 1440 | > th | dose independent | sin | 12 | NA |
| 634 | 738.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 652 | 738.58 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 665 | 739.16 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 666 | 739.24 | humidity | 60 | 1440 | < th | dose independent | sin | 12 | NA |
| 702 | 740.02 | wind | 7 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 721 | 740.65 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 727 | 741.18 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 819 | 742.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 836 | 742.80 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 839 | 742.85 | humidity | 60 | 1440 | < th | dose dependent | no | NA | NA |
| 925 | 743.23 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 931 | 743.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |