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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0238500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Scramblase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0389) R2 : 0.341
β1 : -1.14 (0.143) R2dD : 0.0977 R2D : 0.0317
β2 : 1.95 (0.149) R2dC : 0.554 R2C : -0.286
β3 : 1.64 (0.122) R2dE : 0.594 R2E : -0.323
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.191 (0.0832) R2dN8 : 0.0108 R2N8 : -0.0169
σ : 0.719
deviance : 238.16
__
_____
C
peak time of C : 18.9
E
wheather : temperature
threshold : 20.51
memory length : 285
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.7
open length of G : 15.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
233.38 0.718 4.47 -1.28 1.9 1.59 0.106 -1.06 -0.233 19 20.54 266 20.9 15.6
236.78 0.717 4.44 -1.16 1.93 1.62 0.771 -- -0.207 19 20.51 284 20.8 15.5
233.22 0.711 4.47 -1.29 1.9 1.6 -- -1.1 -0.233 19 20.59 272 20.8 15.6
238.16 0.719 4.44 -1.14 1.95 1.64 -- -- -0.191 18.9 20.51 285 20.7 15.5
277.72 0.776 4.46 -1.31 -- 1.28 -- -0.315 -0.46 -- 22.08 1109 21.2 16
329.38 0.851 4.37 -0.802 0.51 -- 0.45 -- -0.012 17.7 -- -- -- --
329.83 0.85 4.37 -0.803 0.513 -- -- -- -0.00981 17.5 -- -- -- --
275.1 0.773 4.47 -1.33 -- 1.49 -- -- -0.442 -- 21.94 1014 19.1 19.2
271.45 0.767 4.43 -- 1.83 1.49 -- -- -0.0865 18.8 20.6 288 20.8 15.4
343.51 0.866 4.36 -0.82 -- -- -- -- -0.0223 -- -- -- -- --
346.84 0.871 4.35 -- 0.526 -- -- -- 0.0797 17.4 -- -- -- --
313.51 0.825 4.4 -- -- 1.19 -- -- -0.227 -- 22.2 1015 19.2 18.8
361.26 0.887 4.34 -- -- -- -- -- 0.0687 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 239.75 temperature 15 270 > th dose dependent rect. 21 15
2 241.75 temperature 15 10 > th dose dependent rect. 8 21
5 242.94 temperature 20 270 > th dose independent rect. 21 16
14 244.51 temperature 10 270 > th dose dependent rect. 6 21
16 244.73 temperature 20 270 > th dose dependent rect. 18 19
29 246.77 temperature 20 270 > th dose independent rect. 6 21
58 249.83 temperature 10 270 > th dose dependent rect. 8 17
68 250.50 temperature 30 90 < th dose dependent rect. 13 22
72 250.62 temperature 30 90 < th dose dependent rect. 15 20
76 250.87 temperature 30 270 < th dose dependent rect. 11 21
90 251.92 temperature 30 270 < th dose dependent rect. 13 19
91 251.93 temperature 30 270 < th dose dependent rect. 24 21
93 251.96 temperature 30 90 < th dose dependent rect. 23 23
121 253.45 temperature 20 270 > th dose independent rect. 18 22
127 253.67 temperature 20 270 > th dose dependent sin 8 NA
221 257.16 temperature 30 270 < th dose dependent sin 8 NA
336 259.80 temperature 30 10 < th dose dependent rect. 16 18
347 260.04 temperature 30 10 < th dose dependent rect. 1 23
359 260.31 temperature 20 10 > th dose dependent rect. 21 23
381 260.78 temperature 30 270 < th dose dependent rect. 1 8
392 260.99 temperature 30 90 < th dose dependent rect. 4 17
396 261.01 temperature 30 10 < th dose dependent rect. 12 22
397 261.03 temperature 20 4320 > th dose independent rect. 14 10
406 261.16 temperature 30 10 < th dose dependent rect. 5 17
453 261.97 temperature 30 10 < th dose dependent rect. 14 20
470 262.34 temperature 30 270 < th dose dependent rect. 23 10
472 262.36 temperature 20 4320 < th dose independent rect. 14 10
500 262.79 temperature 30 90 < th dose dependent rect. 15 23
505 262.83 temperature 30 30 < th dose dependent rect. 19 23
529 263.16 temperature 20 4320 > th dose independent sin 18 NA
545 263.34 temperature 30 90 < th dose dependent no NA NA
599 263.93 temperature 25 4320 < th dose dependent rect. 17 5
612 264.07 temperature 25 4320 < th dose dependent rect. 20 2
616 264.12 temperature 20 4320 < th dose independent sin 18 NA
672 264.56 temperature 20 10 > th dose dependent no NA NA
677 264.60 temperature 30 90 < th dose dependent rect. 3 23
722 265.05 temperature 20 90 > th dose independent rect. 21 8
752 265.32 temperature 20 270 < th dose independent rect. 23 22
767 265.43 temperature 30 30 < th dose dependent rect. 9 23
828 265.90 temperature 15 4320 > th dose dependent rect. 21 1
987 266.92 temperature 20 4320 < th dose independent rect. 18 1