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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0237000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peroxidase P7 (EC 1.11.1.7) (TP7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.4 (0.237) R2 : 0.218
β1 : 5.32 (0.53) R2dD : 5.33 R2D : -23.4
β2 : -- (--) R2dC : -- R2C : --
β3 : 272 (26.9) R2dE : 1330 R2E : -1330
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 574 (57.1) R2dD*E : 1300 R2D*E : -1300
γ1 : -0.0145 (0.0572) R2dN8 : 0.000108 R2N8 : -18
σ : 0.497
deviance : 113.72
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.13
memory length : 741
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.7
open length of G : 0.767

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.98 0.497 5.36 5.27 0.179 273 -0.286 575 -0.01 9.65 20.01 729 15.9 0.879
143.39 0.562 3.03 -0.0255 0.0938 0.714 0.319 -- -0.0767 11 20.01 729 15.9 0.879
112.02 0.493 5.38 5.27 0.168 272 -- 574 -0.0355 10.1 20.06 736 15.7 0.783
130.59 0.532 3.01 0.139 0.205 1.5 -- -- 0.00881 11 25.33 819 15.5 1.3
113.72 0.497 5.4 5.32 -- 272 -- 574 -0.0145 -- 20.13 741 15.7 0.767
143.89 0.562 3.03 -0.0378 0.101 -- 0.292 -- -0.0801 10.7 -- -- -- --
144.03 0.562 3.03 -0.0283 0.121 -- -- -- -0.0809 8.54 -- -- -- --
132.93 0.537 3.02 0.144 -- 1.65 -- -- -0.0127 -- 23.68 804 15.6 1.22
130.69 0.532 3.01 -- 0.23 1.62 -- -- -0.0096 9.98 24.53 794 15.7 1.2
144.85 0.562 3.03 -0.0279 -- -- -- -- -0.0798 -- -- -- -- --
144.05 0.561 3.03 -- 0.121 -- -- -- -0.0777 8.56 -- -- -- --
133.38 0.538 3.02 -- -- 1.52 -- -- -0.031 -- 23.82 803 15.8 1.08
144.87 0.562 3.03 -- -- -- -- -- -0.0767 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.05 temperature 20.0 720 < th dose independent rect. 16 1
2 112.30 temperature 20.0 720 < th dose dependent rect. 16 1
13 119.62 temperature 20.0 270 < th dose dependent rect. 24 1
15 121.60 temperature 15.0 1440 < th dose dependent rect. 4 1
16 122.08 temperature 20.0 90 < th dose dependent rect. 24 4
17 122.26 precipitation 0.1 270 > th dose independent rect. 1 1
18 122.26 precipitation 0.1 270 > th dose dependent rect. 1 1
23 122.68 temperature 15.0 1440 < th dose independent rect. 4 1
24 123.23 humidity 90.0 720 > th dose dependent rect. 17 3
27 123.73 humidity 90.0 720 > th dose independent rect. 16 4
65 126.30 humidity 90.0 720 > th dose dependent rect. 19 1
103 127.62 temperature 20.0 270 < th dose independent rect. 24 1
106 127.69 temperature 15.0 4320 > th dose independent rect. 4 8
120 127.94 temperature 20.0 720 < th dose independent rect. 19 1
139 128.35 temperature 15.0 4320 > th dose independent rect. 4 13
148 128.46 temperature 15.0 4320 > th dose independent rect. 4 3
170 128.89 temperature 15.0 4320 < th dose dependent rect. 9 4
185 129.05 temperature 15.0 4320 < th dose independent rect. 9 2
188 129.05 temperature 15.0 4320 < th dose dependent rect. 9 2
206 129.15 humidity 50.0 14400 < th dose independent rect. 8 1
225 129.15 humidity 50.0 14400 < th dose dependent rect. 8 1
244 129.20 temperature 15.0 4320 < th dose dependent rect. 9 8
247 129.21 temperature 20.0 720 < th dose independent rect. 14 12
266 129.40 temperature 15.0 4320 < th dose dependent rect. 11 2
280 129.60 temperature 15.0 4320 < th dose independent rect. 11 2
282 129.62 temperature 15.0 4320 < th dose independent sin 1 NA
287 129.67 temperature 20.0 720 < th dose independent sin 18 NA
288 129.67 temperature 20.0 720 > th dose independent rect. 15 8
299 129.71 temperature 20.0 720 > th dose independent sin 18 NA
319 129.82 temperature 20.0 720 < th dose independent rect. 9 17
330 129.86 temperature 20.0 720 > th dose independent rect. 11 14
340 129.93 temperature 15.0 4320 < th dose independent rect. 9 8
381 130.16 temperature 15.0 4320 > th dose independent sin 1 NA
387 130.19 temperature 20.0 30 < th dose dependent rect. 24 10
401 130.27 temperature 30.0 720 < th dose dependent rect. 16 3
429 130.42 precipitation 0.1 1440 > th dose independent rect. 10 1
431 130.42 precipitation 0.1 1440 > th dose dependent rect. 10 1
454 130.52 temperature 15.0 4320 > th dose independent rect. 9 3
455 130.52 atmosphere 1005.0 10 < th dose independent rect. 1 4
458 130.53 temperature 20.0 1440 > th dose independent rect. 11 1
474 130.60 temperature 15.0 4320 > th dose independent rect. 9 8
588 131.08 atmosphere 1005.0 270 < th dose independent rect. 1 1
601 131.14 precipitation 0.1 10 > th dose independent rect. 1 1
612 131.14 precipitation 0.1 10 > th dose dependent rect. 1 1
632 131.19 precipitation 0.1 10 > th dose independent rect. 19 7
637 131.19 precipitation 0.1 10 > th dose dependent rect. 19 7
658 131.28 precipitation 0.1 10 > th dose independent rect. 22 4
663 131.28 precipitation 0.1 10 > th dose dependent rect. 22 4
676 131.32 humidity 90.0 720 < th dose independent rect. 16 5
712 131.45 temperature 20.0 90 < th dose independent rect. 18 10
783 131.69 temperature 20.0 90 < th dose independent rect. 14 14
840 131.91 temperature 20.0 90 < th dose independent rect. 12 16
844 131.92 humidity 50.0 14400 > th dose independent rect. 22 11
903 132.19 temperature 15.0 4320 > th dose independent rect. 13 5
913 132.21 temperature 15.0 4320 > th dose independent rect. 13 1
984 132.46 temperature 25.0 720 < th dose dependent rect. 19 1
995 132.51 humidity 90.0 270 > th dose independent rect. 24 1