Os02g0236800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase (EC 1.11.1.7).
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Os02g0236800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.17 | 0.587 | 7.49 | -1.32 | 2.58 | 2.23 | 1.39 | -1.21 | -0.109 | 20.5 | 11.28 | 358 | -- | -- |
| 157.09 | 0.584 | 7.47 | -1.13 | 2.56 | 2.2 | 1.26 | -- | -0.0588 | 20.5 | 10.38 | 375 | -- | -- |
| 161.96 | 0.593 | 7.48 | -1.24 | 2.55 | 2.21 | -- | -0.403 | -0.0781 | 20.4 | 8.356 | 380 | -- | -- |
| 162.01 | 0.593 | 7.47 | -1.17 | 2.54 | 2.19 | -- | -- | -0.0588 | 20.4 | 8.069 | 405 | -- | -- |
| 386.18 | 0.915 | 7.44 | -1.71 | -- | 3.63 | -- | -1.78 | -0.202 | -- | 24.2 | 619 | -- | -- |
| 209.3 | 0.678 | 7.41 | -0.655 | 3.04 | -- | 1.42 | -- | 0.26 | 20 | -- | -- | -- | -- |
| 215.17 | 0.687 | 7.41 | -0.693 | 3.04 | -- | -- | -- | 0.262 | 19.9 | -- | -- | -- | -- |
| 391.08 | 0.921 | 7.41 | -1.43 | -- | 3.41 | -- | -- | -0.127 | -- | 24.2 | 621 | -- | -- |
| 194.89 | 0.65 | 7.45 | -- | 2.66 | 1.78 | -- | -- | 0.107 | 20.3 | 14.3 | 398 | -- | -- |
| 719.76 | 1.25 | 7.33 | -0.725 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 227.81 | 0.706 | 7.39 | -- | 3.05 | -- | -- | -- | 0.339 | 19.9 | -- | -- | -- | -- |
| 441.28 | 0.978 | 7.37 | -- | -- | 3.15 | -- | -- | 0.0657 | -- | 24.34 | 612 | -- | -- |
| 733.62 | 1.26 | 7.32 | -- | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 18 | 149.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 12 |
| 34 | 150.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 64 | 152.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 66 | 152.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 76 | 153.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 186 | 155.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 234 | 156.82 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 237 | 156.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 254 | 157.15 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 269 | 157.44 | temperature | 10 | 720 | > th | dose dependent | sin | 23 | NA |
| 271 | 157.48 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 274 | 157.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 277 | 157.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 278 | 157.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 425 | 158.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 466 | 158.94 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 12 |
| 487 | 158.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 507 | 159.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 557 | 159.17 | temperature | 15 | 4320 | > th | dose dependent | sin | 15 | NA |
| 682 | 159.45 | temperature | 30 | 4320 | < th | dose dependent | sin | 15 | NA |
| 783 | 159.69 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 789 | 159.69 | temperature | 15 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 804 | 159.71 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 819 | 159.73 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 832 | 159.74 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 17 |
| 886 | 159.79 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |