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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0236600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Class III peroxidase GvPx2b (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0685) R2 : 0.219
β1 : -2.73 (0.363) R2dD : 0.309 R2D : -0.13
β2 : 1.17 (0.152) R2dC : 0.107 R2C : 0.00116
β3 : 1.22 (0.205) R2dE : 0.0902 R2E : -0.117
β4 : -3 (0.69) R2dD*C : 0.0335 R2D*C : -0.0298
β5 : -5.42 (1.18) R2dD*E : 0.113 R2D*E : -0.225
γ1 : -0.995 (0.162) R2dN8 : 0.156 R2N8 : -0.0795
σ : 1.07
deviance : 516.96
__
_____
C
peak time of C : 6.2
E
wheather : temperature
threshold : 26.4
memory length : 951
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
516.96 1.07 4.01 -2.73 1.17 1.22 -3 -5.42 -0.995 6.2 26.4 951 -- --
539.66 1.08 3.84 -1.41 1.01 0.82 -2.83 -- -0.542 5.6 26.7 966 -- --
536.01 1.08 4.01 -2.84 1.03 1.25 -- -6.12 -0.927 5.91 26.8 1096 -- --
554.43 1.1 3.82 -1.4 1.16 0.837 -- -- -0.486 5.97 26.72 889 -- --
585.2 1.13 4.05 -2.97 -- 1.28 -- -6 -0.973 -- 27.1 1240 -- --
557.08 1.11 3.8 -1.16 1.02 -- -2.51 -- -0.338 5.16 -- -- -- --
572.84 1.12 3.79 -1.16 1 -- -- -- -0.326 5.04 -- -- -- --
606.21 1.15 3.82 -1.34 -- 0.672 -- -- -0.408 -- 26.7 1265 -- --
602.79 1.14 3.78 -- 1.14 0.498 -- -- -0.264 5.83 27.5 779 -- --
625.86 1.17 3.8 -1.12 -- -- -- -- -0.301 -- -- -- -- --
608.1 1.15 3.76 -- 0.985 -- -- -- -0.198 5.08 -- -- -- --
645.05 1.19 3.75 -- -- -0.38 -- -- -0.0773 -- 26.61 1254 -- --
658.97 1.2 3.78 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 518.58 humidity 90 14400 < th dose independent rect. 2 1
2 520.44 temperature 25 720 > th dose dependent rect. 15 18
4 521.36 temperature 25 720 > th dose dependent rect. 15 8
9 521.83 temperature 25 720 > th dose dependent sin 15 NA
20 522.28 temperature 25 720 > th dose dependent rect. 15 4
31 522.53 humidity 90 14400 < th dose independent rect. 1 5
58 523.63 humidity 90 14400 > th dose independent rect. 1 2
109 524.61 humidity 90 14400 > th dose independent rect. 1 6
112 524.66 humidity 90 43200 > th dose independent rect. 2 14
128 524.94 humidity 90 43200 < th dose independent rect. 2 14
136 525.06 temperature 20 1440 > th dose dependent rect. 2 1
169 525.57 humidity 90 43200 < th dose independent sin 3 NA
172 525.63 humidity 90 43200 > th dose independent sin 4 NA
177 525.65 humidity 90 14400 > th dose independent rect. 22 7
189 525.71 wind 7 1440 > th dose dependent rect. 22 2
194 525.75 humidity 90 43200 > th dose dependent rect. 4 6
196 525.77 humidity 90 43200 < th dose independent rect. 3 9
211 525.90 humidity 90 43200 > th dose independent rect. 3 8
218 525.95 humidity 80 14400 > th dose dependent rect. 24 3
227 526.00 humidity 90 43200 > th dose dependent rect. 3 14
233 526.03 humidity 90 43200 > th dose independent rect. 2 21
243 526.07 humidity 90 43200 < th dose independent rect. 1 22
253 526.10 temperature 10 720 > th dose dependent rect. 16 9
285 526.28 humidity 90 43200 < th dose independent rect. 22 1
286 526.28 humidity 90 43200 > th dose dependent sin 2 NA
299 526.32 temperature 10 720 > th dose dependent rect. 16 7
349 526.53 humidity 90 43200 > th dose independent rect. 22 1
369 526.58 temperature 10 720 > th dose dependent rect. 16 11
378 526.62 temperature 20 1440 > th dose dependent rect. 22 6
454 526.85 temperature 10 720 > th dose dependent rect. 15 13
493 526.95 humidity 90 43200 > th dose independent rect. 22 20
550 527.09 temperature 30 720 < th dose dependent rect. 18 6
569 527.16 humidity 90 43200 < th dose independent rect. 5 23
573 527.17 humidity 90 43200 > th dose independent rect. 5 23
577 527.18 humidity 90 43200 < th dose independent rect. 22 22
656 527.39 temperature 20 1440 > th dose dependent rect. 22 1
667 527.41 humidity 90 43200 > th dose independent rect. 5 2
685 527.47 humidity 90 43200 > th dose independent no NA NA
686 527.47 humidity 90 43200 < th dose independent rect. 15 23
693 527.48 humidity 90 43200 < th dose independent no NA NA
702 527.49 humidity 90 43200 > th dose independent rect. 15 23
708 527.51 humidity 90 43200 < th dose independent rect. 19 23
718 527.53 humidity 90 43200 > th dose independent rect. 17 23
725 527.54 temperature 25 720 > th dose independent rect. 16 3
734 527.55 temperature 25 1440 > th dose independent rect. 16 8
761 527.61 temperature 25 1440 < th dose independent rect. 16 8
773 527.64 humidity 90 43200 > th dose independent rect. 11 23
816 527.71 humidity 90 43200 < th dose independent rect. 11 23
818 527.71 humidity 80 14400 > th dose dependent rect. 23 5
822 527.72 wind 7 1440 > th dose independent rect. 22 2
830 527.72 temperature 30 720 < th dose dependent rect. 12 13
848 527.76 humidity 90 43200 > th dose independent rect. 8 23
880 527.82 temperature 25 1440 > th dose dependent rect. 7 17
898 527.85 humidity 90 43200 > th dose dependent rect. 22 22
999 528.02 humidity 90 43200 > th dose dependent no NA NA