Os02g0235200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os02g0235200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.17 | 0.748 | 4.17 | 2.54 | 0.155 | -1.9 | -0.354 | 7.64 | 0.159 | 14.7 | 20.6 | 4016 | -- | -- |
| 300.4 | 0.813 | 4.46 | 0.185 | 1.03 | -2.59 | -0.234 | -- | -0.401 | 14.1 | 11.32 | 20443 | -- | -- |
| 253.59 | 0.742 | 4.17 | 2.57 | 0.154 | -1.9 | -- | 7.79 | 0.166 | 14.3 | 20.7 | 4016 | -- | -- |
| 283.77 | 0.785 | 4.45 | 0.557 | 0.211 | -2.14 | -- | -- | -0.346 | 14.3 | 6.655 | 3292 | -- | -- |
| 254.94 | 0.744 | 4.16 | 2.59 | -- | -1.93 | -- | 7.86 | 0.172 | -- | 20.75 | 4000 | -- | -- |
| 364.57 | 0.895 | 4.54 | -0.307 | 0.299 | -- | -0.566 | -- | -0.762 | 13.8 | -- | -- | -- | -- |
| 365.8 | 0.896 | 4.54 | -0.325 | 0.298 | -- | -- | -- | -0.766 | 13.5 | -- | -- | -- | -- |
| 286 | 0.788 | 4.45 | 0.605 | -- | -2.21 | -- | -- | -0.347 | -- | 8.957 | 3698 | -- | -- |
| 290.16 | 0.793 | 4.48 | -- | 0.112 | -1.8 | -- | -- | -0.428 | 15 | 13.9 | 2458 | -- | -- |
| 371.25 | 0.9 | 4.55 | -0.337 | -- | -- | -- | -- | -0.772 | -- | -- | -- | -- | -- |
| 368.58 | 0.898 | 4.53 | -- | 0.304 | -- | -- | -- | -0.73 | 13.6 | -- | -- | -- | -- |
| 290.55 | 0.794 | 4.47 | -- | -- | -1.85 | -- | -- | -0.433 | -- | 9.282 | 2488 | -- | -- |
| 374.24 | 0.903 | 4.54 | -- | -- | -- | -- | -- | -0.735 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 241.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 103 | 246.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 105 | 246.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 122 | 246.56 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 160 | 247.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 163 | 248.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 165 | 248.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 173 | 248.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 199 | 248.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 253 | 249.90 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 353 | 251.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 357 | 251.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 359 | 251.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 361 | 251.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 371 | 252.01 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 12 |
| 373 | 252.02 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 378 | 252.09 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 415 | 252.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 431 | 252.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 444 | 252.66 | temperature | 20 | 4320 | > th | dose dependent | sin | 4 | NA |
| 478 | 252.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 10 |
| 507 | 253.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 536 | 253.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 11 |
| 550 | 253.38 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 20 |
| 609 | 253.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 615 | 253.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 683 | 253.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 686 | 253.95 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 699 | 253.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 23 |
| 703 | 253.98 | temperature | 20 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 756 | 254.15 | temperature | 25 | 4320 | > th | dose independent | sin | 0 | NA |
| 820 | 254.42 | temperature | 25 | 4320 | < th | dose independent | sin | 0 | NA |
| 828 | 254.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 16 |
| 845 | 254.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 16 |
| 846 | 254.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 12 |
| 864 | 254.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 12 |