Os02g0234700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0234700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.68 | 0.72 | 8.28 | -3 | 2.19 | 3.33 | -0.308 | -5.69 | -0.764 | 11.7 | 24.54 | 1036 | -- | -- |
| 244.7 | 0.729 | 8.11 | -1.74 | 2.15 | 2.79 | 0.268 | -- | -0.384 | 11.7 | 24.9 | 1014 | -- | -- |
| 234.91 | 0.714 | 8.27 | -2.96 | 2.22 | 3.35 | -- | -5.52 | -0.735 | 11.6 | 24.62 | 1014 | -- | -- |
| 244.92 | 0.729 | 8.11 | -1.72 | 2.14 | 2.78 | -- | -- | -0.383 | 11.7 | 24.89 | 1013 | -- | -- |
| 414.46 | 0.948 | 8.31 | -3.15 | -- | 2.76 | -- | -5.33 | -0.623 | -- | 25.47 | 1590 | -- | -- |
| 458.39 | 1 | 8.07 | -0.95 | 1.46 | -- | -0.408 | -- | -0.112 | 12.1 | -- | -- | -- | -- |
| 459.11 | 1 | 8.07 | -0.966 | 1.47 | -- | -- | -- | -0.114 | 12.1 | -- | -- | -- | -- |
| 407.82 | 0.945 | 8.19 | -1.49 | -- | 2.73 | -- | -- | -0.523 | -- | 22.75 | 5981 | -- | -- |
| 316.81 | 0.829 | 8.05 | -- | 2.05 | 2.37 | -- | -- | -0.117 | 11.7 | 25.3 | 994 | -- | -- |
| 594.39 | 1.14 | 8.1 | -1.01 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 483.72 | 1.03 | 8.04 | -- | 1.48 | -- | -- | -- | -0.00631 | 12.1 | -- | -- | -- | -- |
| 464.75 | 1.01 | 8.14 | -- | -- | 2.46 | -- | -- | -0.324 | -- | 22.75 | 5981 | -- | -- |
| 621.42 | 1.16 | 8.07 | -- | -- | -- | -- | -- | -0.0224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 240.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 6 | 244.83 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 21 | 249.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 15 |
| 31 | 250.54 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 51 | 252.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 84 | 255.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 90 | 255.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 98 | 255.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 120 | 256.04 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 135 | 256.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 164 | 256.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 19 |
| 257 | 257.33 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 486 | 263.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 542 | 266.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 575 | 267.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 578 | 267.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 631 | 270.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 635 | 270.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 638 | 270.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 643 | 270.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 650 | 270.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 655 | 270.93 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 745 | 273.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 747 | 273.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 750 | 273.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 751 | 273.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 783 | 273.82 | temperature | 30 | 1440 | < th | dose independent | sin | 23 | NA |
| 905 | 274.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 921 | 275.14 | temperature | 30 | 1440 | > th | dose independent | sin | 22 | NA |
| 993 | 275.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 996 | 275.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 15 |