FiT-DB / Search/ Help/ Sample detail

Os02g0234300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : U box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.02 (0.0236) R2 : 0.859
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.23 (0.0626) R2dC : 0.87 R2C : 0.637
β3 : 1.97 (0.0759) R2dE : 0.223 R2E : -0.00922
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.191 (0.05) R2dN8 : 0.00513 R2N8 : -0.0113
σ : 0.443
deviance : 90.51
__
_____
C
peak time of C : 7.78
E
wheather : temperature
threshold : 10.83
memory length : 190
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.18
open length of G : 18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.39 0.426 8.98 0.198 3.27 1.94 0.0461 2.9 -0.0881 8.01 7.6 261 3.18 19.3
92.19 0.447 9.01 0.064 3.23 1.91 -0.0467 -- -0.131 8.05 9.342 222 3.4 19.3
82.33 0.423 8.99 0.195 3.28 1.98 -- 2.91 -0.0874 7.97 7.004 260 3.17 19.3
90.79 0.444 9.01 -0.0118 3.25 2 -- -- -0.156 7.71 10.49 215 4.17 17.6
469.73 1.01 9.07 0.0547 -- 2 -- 0.909 -0.0329 -- 7.004 260 3.17 19.3
124.72 0.524 8.98 0.208 2.96 -- 0.401 -- 0.0308 9.47 -- -- -- --
125.3 0.524 8.98 0.222 2.96 -- -- -- 0.0309 9.45 -- -- -- --
433.64 0.974 9.08 0.0758 -- 1.8 -- -- -0.0415 -- -24.45 1572 3.7 18.2
90.51 0.443 9.02 -- 3.23 1.97 -- -- -0.191 7.78 10.83 190 4.18 18
638.6 1.18 9.06 0.204 -- -- -- -- 0.0403 -- -- -- -- --
126.6 0.526 8.98 -- 2.96 -- -- -- 0.00615 9.44 -- -- -- --
140.17 0.551 9.31 -- -- 3.56 -- -- -0.363 -- -53.92 1779 0.567 12.1
639.7 1.18 9.06 -- -- -- -- -- 0.0177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.66 temperature 10.0 270 > th dose dependent rect. 3 19
3 84.01 temperature 15.0 10 > th dose dependent rect. 5 17
6 84.64 temperature 15.0 10 > th dose dependent rect. 5 19
17 86.89 temperature 15.0 10 > th dose dependent rect. 5 15
21 87.19 temperature 10.0 720 > th dose dependent rect. 3 6
29 87.61 temperature 10.0 720 > th dose dependent rect. 4 9
43 88.44 temperature 10.0 720 > th dose dependent rect. 3 4
46 88.53 temperature 10.0 720 > th dose dependent rect. 3 12
86 90.26 temperature 30.0 720 < th dose dependent rect. 7 2
88 90.29 temperature 30.0 270 < th dose independent rect. 7 10
113 91.28 temperature 10.0 720 > th dose dependent sin 5 NA
130 91.71 temperature 30.0 720 < th dose dependent rect. 5 5
140 92.01 temperature 20.0 270 > th dose independent rect. 4 17
174 92.64 temperature 30.0 720 < th dose dependent rect. 3 7
175 92.66 temperature 20.0 720 > th dose independent rect. 4 11
186 93.00 temperature 30.0 30 < th dose independent rect. 11 8
260 94.48 temperature 30.0 270 < th dose dependent rect. 7 9
266 94.57 temperature 30.0 10 < th dose dependent rect. 9 10
307 95.25 temperature 30.0 720 < th dose independent rect. 7 5
317 95.35 temperature 20.0 720 > th dose independent rect. 4 7
325 95.47 radiation 1.0 30 < th dose independent rect. 20 23
328 95.48 temperature 10.0 720 > th dose dependent rect. 23 8
329 95.49 radiation 10.0 30 < th dose dependent sin 10 NA
332 95.50 radiation 1.0 30 < th dose dependent rect. 20 23
350 95.76 temperature 10.0 10 > th dose dependent sin 0 NA
365 95.92 temperature 30.0 720 < th dose independent rect. 22 14
472 96.86 atmosphere 995.0 270 > th dose independent rect. 7 10
488 96.93 radiation 1.0 30 < th dose independent sin 9 NA
518 97.15 temperature 30.0 270 < th dose independent rect. 13 14
586 97.64 temperature 30.0 720 < th dose independent rect. 24 10
604 97.81 humidity 50.0 270 > th dose independent rect. 7 10
612 97.85 temperature 30.0 10 < th dose independent rect. 11 18
617 97.89 temperature 20.0 720 > th dose independent sin 0 NA
663 98.18 radiation 20.0 270 < th dose independent rect. 17 14
665 98.19 temperature 30.0 270 < th dose independent rect. 8 19
698 98.40 temperature 30.0 720 < th dose dependent sin 5 NA
715 98.54 precipitation 0.1 270 < th dose independent rect. 17 14
717 98.54 precipitation 0.1 270 < th dose dependent rect. 17 14
724 98.59 temperature 10.0 270 > th dose independent rect. 7 10
725 98.59 atmosphere 1015.0 270 < th dose independent rect. 7 10
726 98.59 temperature 10.0 270 > th dose independent rect. 17 14
728 98.61 temperature 10.0 720 > th dose dependent rect. 8 7
740 98.72 wind 9.0 270 < th dose independent rect. 17 14
754 98.82 temperature 30.0 270 < th dose independent rect. 9 17
770 98.93 precipitation 0.1 270 < th dose independent rect. 7 10
772 98.93 precipitation 0.1 270 < th dose dependent rect. 7 10
783 99.00 radiation 1.0 720 < th dose dependent rect. 15 9
799 99.07 temperature 30.0 720 < th dose independent rect. 19 16
853 99.32 radiation 1.0 720 < th dose independent rect. 15 9
887 99.51 atmosphere 995.0 30 > th dose independent rect. 9 10
898 99.59 humidity 50.0 270 > th dose independent rect. 17 14
900 99.59 temperature 30.0 90 < th dose dependent rect. 11 6
903 99.61 atmosphere 995.0 270 > th dose independent rect. 17 14
921 99.70 precipitation 0.1 270 < th dose independent rect. 3 18
924 99.70 precipitation 0.1 270 < th dose dependent rect. 3 18
945 99.81 temperature 30.0 270 < th dose independent rect. 22 18
964 99.89 wind 9.0 270 < th dose independent rect. 7 10
982 99.97 precipitation 0.1 270 < th dose independent rect. 21 6
983 99.97 temperature 15.0 270 > th dose independent rect. 21 7
985 99.97 precipitation 0.1 270 < th dose dependent rect. 21 6
993 99.98 radiation 40.0 270 < th dose dependent rect. 17 14