Os02g0232000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0232000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Heat shock transcription factor 29 (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.09	(0.0356)	R²	:	0.815
β₁	:	2.06	(0.131)	R²_dD	:	0.108	R²_D	:	0.0807
β₂	:	1.88	(0.115)	R²_dC	:	0.171	R²_C	:	0.424
β₃	:	-2.03	(0.0979)	R²_dE	:	0.269	R²_E	:	0.497
β₄	:	3.47	(0.424)	R²_dD*C	:	0.0278	R²_D*C	:	0.0449
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.134	(0.0761)	R²_dN8	:	0.0023	R²_N8	:	-0.00361
σ	:	0.666
deviance	:	204.19
__

_____

C
peak time of C	:	6.52
E
wheather	:	temperature
threshold	:	18.9
memory length	:	52
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	7.45
open length of G	:	20

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
199.88	0.664	4.1	2.07	1.82	-2.11	2.91	-1.12	0.149	6.64	18.81	57	7.38	20
204.19	0.666	4.09	2.06	1.88	-2.03	3.47	--	0.134	6.52	18.9	52	7.45	20
218.16	0.688	4.09	2.14	1.73	-2.19	--	-1.86	0.134	6.71	18.89	51	7.48	20
234.1	0.713	4.09	2.17	1.82	-2.11	--	--	0.124	6.63	18.8	50	7.5	20
327.59	0.843	4.11	2.76	--	-2.63	--	-1.68	0.231	--	18.7	34	7.8	19.8
374.15	0.907	4.07	1.76	3.35	--	4.19	--	0.0877	5.93	--	--	--	--
417.14	0.956	4.08	1.79	3.37	--	--	--	0.0711	5.89	--	--	--	--
337.87	0.856	4.1	2.34	--	-2.8	--	--	0.246	--	18.7	56	7.67	19.6
356.82	0.88	4.09	--	1.88	-2.02	--	--	0.0783	6.62	18.81	50	7.53	20
1006.7	1.48	4.13	1.89	--	--	--	--	0.149	--	--	--	--	--
501.83	1.05	4.12	--	3.4	--	--	--	-0.129	5.87	--	--	--	--
423.22	0.958	4.29	--	--	-3.24	--	--	-0.42	--	14.8	172	7.35	18.9
1101.34	1.55	4.18	--	--	--	--	--	-0.061	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	221.50	temperature	20.0	90	> th	dose independent	rect.	7	20
2	222.00	temperature	15.0	90	> th	dose dependent	rect.	21	6
6	228.65	temperature	20.0	90	> th	dose independent	rect.	21	6
8	231.12	temperature	15.0	270	> th	dose independent	rect.	5	21
21	236.29	temperature	10.0	270	> th	dose dependent	rect.	20	15
28	238.79	temperature	20.0	10	> th	dose independent	rect.	7	21
38	241.03	temperature	15.0	10	> th	dose dependent	rect.	21	7
48	242.84	wind	5.0	90	< th	dose independent	rect.	3	4
55	243.85	temperature	20.0	10	> th	dose independent	rect.	21	7
56	243.87	temperature	10.0	90	> th	dose dependent	rect.	7	20
70	246.77	precipitation	0.1	90	< th	dose independent	rect.	3	4
71	246.77	precipitation	0.1	90	< th	dose dependent	rect.	3	4
77	247.11	wind	5.0	270	< th	dose independent	rect.	3	1
81	247.71	wind	9.0	90	< th	dose dependent	rect.	3	4
86	248.61	atmosphere	1015.0	90	< th	dose independent	rect.	7	20
100	249.69	temperature	10.0	90	> th	dose independent	rect.	3	4
102	249.69	temperature	30.0	90	< th	dose independent	rect.	3	4
103	249.69	humidity	50.0	90	> th	dose independent	rect.	3	4
105	249.69	atmosphere	995.0	90	> th	dose independent	rect.	3	4
106	249.69	atmosphere	1015.0	90	< th	dose independent	rect.	3	4
107	249.69	radiation	40.0	90	< th	dose independent	rect.	3	4
110	249.74	wind	9.0	90	< th	dose independent	rect.	7	20
115	250.17	temperature	20.0	270	> th	dose independent	rect.	22	2
116	250.22	radiation	40.0	90	< th	dose dependent	rect.	3	4
117	250.29	temperature	20.0	90	> th	dose independent	rect.	21	16
122	250.64	wind	1.0	270	> th	dose independent	rect.	3	1
132	251.07	temperature	30.0	90	< th	dose dependent	rect.	3	4
138	251.39	temperature	20.0	270	> th	dose independent	rect.	19	17
143	251.58	precipitation	0.1	270	< th	dose independent	rect.	3	1
145	251.58	precipitation	0.1	270	< th	dose dependent	rect.	3	1
167	253.81	wind	3.0	30	< th	dose independent	rect.	3	6
169	254.00	precipitation	0.1	90	< th	dose independent	rect.	7	20
170	254.00	atmosphere	995.0	90	> th	dose dependent	rect.	3	4
171	254.00	precipitation	0.1	90	< th	dose dependent	rect.	7	20
173	254.32	temperature	20.0	10	> th	dose independent	rect.	22	16
181	254.73	wind	5.0	270	< th	dose independent	rect.	1	5
189	255.32	wind	9.0	270	< th	dose dependent	rect.	3	1
190	255.41	atmosphere	995.0	90	> th	dose independent	rect.	7	20
197	255.82	wind	7.0	30	< th	dose dependent	rect.	3	6
198	255.88	wind	1.0	270	> th	dose independent	rect.	2	3
209	256.32	temperature	30.0	270	< th	dose dependent	rect.	1	4
210	256.33	temperature	25.0	270	< th	dose independent	rect.	1	4
211	256.37	humidity	50.0	90	> th	dose dependent	rect.	3	4
219	257.01	atmosphere	995.0	270	> th	dose dependent	rect.	3	1
221	257.06	temperature	10.0	270	> th	dose independent	rect.	3	1
223	257.06	temperature	30.0	270	< th	dose independent	rect.	3	1
224	257.06	humidity	50.0	270	> th	dose independent	rect.	3	1
227	257.06	atmosphere	995.0	270	> th	dose independent	rect.	3	1
228	257.06	atmosphere	1010.0	270	< th	dose independent	rect.	3	1
230	257.06	radiation	1.0	270	< th	dose independent	rect.	3	1
236	257.06	radiation	1.0	270	< th	dose dependent	rect.	3	1
249	257.42	temperature	10.0	10	> th	dose dependent	rect.	9	18
264	258.25	wind	1.0	270	> th	dose independent	rect.	1	5
338	259.78	wind	9.0	270	< th	dose independent	rect.	5	21
362	260.81	temperature	25.0	270	< th	dose independent	rect.	23	7
370	261.15	precipitation	0.1	270	< th	dose independent	rect.	1	5
371	261.15	precipitation	0.1	270	< th	dose dependent	rect.	1	5
374	261.19	temperature	30.0	270	< th	dose dependent	rect.	3	1
380	261.26	precipitation	0.1	90	< th	dose independent	rect.	3	16
381	261.26	precipitation	0.1	90	< th	dose dependent	rect.	3	16
401	262.08	radiation	40.0	10	< th	dose dependent	rect.	3	6
405	262.21	precipitation	0.1	270	< th	dose independent	rect.	5	21
406	262.21	precipitation	0.1	270	< th	dose dependent	rect.	5	21
431	263.22	atmosphere	995.0	270	> th	dose dependent	rect.	1	5
439	263.51	humidity	50.0	270	> th	dose dependent	rect.	3	1
444	263.64	atmosphere	1010.0	90	< th	dose independent	rect.	19	8
459	264.04	radiation	30.0	270	< th	dose dependent	rect.	1	5
464	264.12	atmosphere	1015.0	270	< th	dose independent	rect.	5	21
465	264.14	temperature	10.0	270	> th	dose independent	rect.	1	5
468	264.14	humidity	50.0	270	> th	dose independent	rect.	1	5
471	264.14	atmosphere	995.0	270	> th	dose independent	rect.	1	5
472	264.14	atmosphere	1015.0	270	< th	dose independent	rect.	1	5
473	264.14	radiation	20.0	270	< th	dose independent	rect.	1	5
500	264.44	radiation	1.0	90	< th	dose dependent	rect.	19	8
502	264.45	temperature	30.0	90	< th	dose independent	rect.	19	8
503	264.45	humidity	50.0	90	> th	dose independent	rect.	19	8
505	264.45	atmosphere	995.0	90	> th	dose independent	rect.	19	8
506	264.45	radiation	1.0	90	< th	dose independent	rect.	19	8
511	264.45	temperature	10.0	90	> th	dose independent	rect.	3	16
512	264.45	atmosphere	1015.0	90	< th	dose independent	rect.	3	16
518	264.48	wind	9.0	90	< th	dose independent	rect.	19	8
528	264.61	precipitation	0.1	90	< th	dose independent	rect.	19	8
530	264.61	precipitation	0.1	90	< th	dose dependent	rect.	19	8
551	265.25	atmosphere	1010.0	30	< th	dose independent	rect.	9	18
573	265.76	atmosphere	995.0	10	> th	dose dependent	rect.	3	6
576	265.87	wind	9.0	270	< th	dose dependent	rect.	1	5
579	265.98	wind	9.0	90	< th	dose independent	rect.	3	16
625	266.63	humidity	50.0	90	> th	dose independent	rect.	7	20
639	266.73	temperature	30.0	270	< th	dose dependent	rect.	23	7
668	267.61	radiation	1.0	270	< th	dose dependent	rect.	2	9
682	267.91	humidity	70.0	10	> th	dose independent	rect.	3	6
690	267.96	temperature	10.0	90	> th	dose dependent	rect.	3	4
703	268.26	wind	9.0	90	< th	dose dependent	rect.	19	8
745	268.93	precipitation	0.1	10	< th	dose independent	rect.	9	18
746	268.93	precipitation	0.1	10	< th	dose dependent	rect.	9	18
803	269.68	humidity	50.0	90	> th	dose dependent	rect.	19	8
817	270.07	temperature	15.0	270	> th	dose independent	rect.	5	9
823	270.29	atmosphere	995.0	270	> th	dose independent	rect.	5	21
851	270.53	humidity	50.0	270	> th	dose dependent	rect.	1	5
907	271.57	wind	9.0	90	< th	dose dependent	rect.	3	16
913	271.68	humidity	50.0	14400	> th	dose independent	rect.	4	5
922	271.88	temperature	10.0	270	> th	dose dependent	rect.	3	2
927	271.98	radiation	1.0	270	< th	dose independent	rect.	2	9
996	272.98	wind	9.0	270	< th	dose independent	rect.	5	9