Os02g0231700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0231700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 353.49 | 0.883 | 3.4 | 0.536 | 0.327 | 14.5 | 0.807 | 31.1 | -0.276 | 22.3 | 59.9 | 80 | 9.02 | 0.983 |
| 357.53 | 0.887 | 3.37 | 0.519 | 0.341 | 3.33 | 0.557 | -- | -0.262 | 22.5 | 62 | 31 | 7.96 | 2.88 |
| 355.95 | 0.879 | 3.4 | 0.505 | 0.323 | 14.2 | -- | 30.1 | -0.279 | 22.8 | 59.38 | 70 | 9.03 | 1.02 |
| 358.76 | 0.888 | 3.37 | 0.496 | 0.337 | 3.32 | -- | -- | -0.264 | 22.7 | 63 | 62 | 8.13 | 2.85 |
| 362.34 | 0.887 | 3.39 | 0.511 | -- | 13.9 | -- | 29.8 | -0.277 | -- | 59.48 | 61 | 9.01 | 1.17 |
| 390.09 | 0.926 | 3.38 | 0.518 | 0.265 | -- | 0.51 | -- | -0.29 | 22.6 | -- | -- | -- | -- |
| 391.12 | 0.926 | 3.38 | 0.497 | 0.262 | -- | -- | -- | -0.292 | 23 | -- | -- | -- | -- |
| 365.71 | 0.895 | 3.36 | 0.502 | -- | 3.16 | -- | -- | -0.264 | -- | 63 | 62 | 8.13 | 2.85 |
| 365.24 | 0.895 | 3.38 | -- | 0.341 | 3.32 | -- | -- | -0.319 | 22.8 | 63 | 62 | 8.13 | 2.85 |
| 395.39 | 0.929 | 3.37 | 0.502 | -- | -- | -- | -- | -0.29 | -- | -- | -- | -- | -- |
| 397.61 | 0.933 | 3.39 | -- | 0.266 | -- | -- | -- | -0.348 | 23.2 | -- | -- | -- | -- |
| 372.38 | 0.902 | 3.38 | -- | -- | 3.16 | -- | -- | -0.319 | -- | 63 | 62 | 8.13 | 2.85 |
| 402.04 | 0.936 | 3.38 | -- | -- | -- | -- | -- | -0.346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 355.21 | humidity | 60 | 90 | < th | dose independent | rect. | 9 | 1 |
| 16 | 355.57 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 15 |
| 17 | 356.74 | humidity | 60 | 30 | < th | dose dependent | rect. | 9 | 1 |
| 92 | 358.27 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 15 |
| 157 | 367.19 | wind | 7 | 90 | > th | dose independent | rect. | 18 | 16 |
| 158 | 367.82 | humidity | 70 | 90 | > th | dose independent | rect. | 16 | 11 |
| 159 | 367.88 | humidity | 60 | 270 | > th | dose independent | rect. | 13 | 12 |
| 160 | 368.09 | humidity | 70 | 30 | > th | dose independent | rect. | 17 | 9 |
| 176 | 368.24 | humidity | 70 | 30 | > th | dose independent | rect. | 13 | 13 |
| 177 | 368.26 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 2 |
| 201 | 369.29 | wind | 3 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 203 | 369.39 | wind | 7 | 90 | > th | dose independent | rect. | 23 | 11 |
| 209 | 369.67 | wind | 5 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 214 | 369.95 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 11 |
| 217 | 370.35 | temperature | 30 | 10 | < th | dose independent | rect. | 17 | 22 |
| 218 | 370.35 | wind | 3 | 90 | > th | dose dependent | rect. | 1 | 9 |
| 230 | 370.56 | humidity | 70 | 90 | < th | dose independent | rect. | 14 | 6 |
| 241 | 370.57 | wind | 5 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 248 | 370.72 | wind | 7 | 90 | > th | dose dependent | rect. | 1 | 9 |
| 284 | 370.94 | wind | 7 | 30 | > th | dose independent | rect. | 7 | 4 |
| 292 | 370.97 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 1 |
| 300 | 371.02 | wind | 7 | 30 | > th | dose independent | rect. | 9 | 2 |
| 305 | 371.04 | temperature | 20 | 90 | < th | dose dependent | rect. | 8 | 12 |
| 308 | 371.06 | wind | 3 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 309 | 371.11 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 1 |
| 310 | 371.11 | temperature | 20 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 313 | 371.13 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 329 | 371.19 | humidity | 60 | 270 | < th | dose independent | rect. | 14 | 19 |
| 331 | 371.23 | wind | 7 | 90 | > th | dose dependent | rect. | 7 | 3 |
| 337 | 371.24 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 386 | 371.37 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 4 |
| 388 | 371.37 | temperature | 20 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 404 | 371.39 | humidity | 60 | 270 | < th | dose independent | sin | 13 | NA |
| 435 | 371.45 | humidity | 70 | 90 | > th | dose independent | sin | 15 | NA |
| 437 | 371.47 | humidity | 60 | 270 | < th | dose independent | rect. | 15 | 2 |
| 463 | 371.65 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 470 | 371.73 | humidity | 60 | 270 | > th | dose independent | sin | 17 | NA |
| 550 | 372.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 589 | 372.38 | humidity | 80 | 10 | < th | dose dependent | rect. | 15 | 12 |
| 607 | 372.41 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 641 | 372.58 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 13 |
| 743 | 372.95 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 777 | 373.04 | humidity | 60 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 807 | 373.20 | humidity | 60 | 270 | < th | dose dependent | rect. | 15 | 5 |
| 820 | 373.22 | humidity | 60 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 827 | 373.28 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 12 | 13 |
| 838 | 373.35 | humidity | 70 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 854 | 373.37 | wind | 7 | 10 | < th | dose independent | sin | 10 | NA |
| 873 | 373.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 964 | 373.95 | radiation | 40 | 10 | < th | dose independent | rect. | 2 | 10 |
| 995 | 374.02 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 22 |
| 996 | 374.04 | humidity | 50 | 30 | > th | dose dependent | rect. | 12 | 14 |
| 998 | 374.05 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 18 |