FiT-DB / Search/ Help/ Sample detail

Os02g0229000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 40S ribosomal protein S19-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0272) R2 : 0.448
β1 : 1.48 (0.0994) R2dD : 0.278 R2D : 0.229
β2 : 0.828 (0.0691) R2dC : 0.175 R2C : 0.157
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.333 (0.0579) R2dN8 : 0.0535 R2N8 : -0.003
σ : 0.51
deviance : 118.75
__
_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.26 0.482 13 1.5 0.954 0.84 1.54 1.85 0.298 21.2 19.04 90 -- --
109.03 0.486 13 1.52 0.933 0.633 1.03 -- 0.312 20.9 17.09 85 -- --
111.67 0.492 13 1.5 0.928 0.804 -- 1.21 0.313 20.8 25.14 86 -- --
112.56 0.494 13 1.49 0.929 0.644 -- -- 0.312 20.9 18.04 85 -- --
131.94 0.535 13 1.39 -- 0.749 -- 1.96 0.283 -- -28.8 871 -- --
115.19 0.503 13 1.51 0.827 -- 1.09 -- 0.331 20.1 -- -- -- --
118.75 0.51 13 1.48 0.828 -- -- -- 0.333 20 -- -- -- --
132.52 0.536 13 1.42 -- 0.804 -- -- 0.234 -- -16.87 839 -- --
169.72 0.61 13 -- 0.964 0.619 -- -- 0.174 21.1 10.01 85 -- --
156.12 0.584 13 1.47 -- -- -- -- 0.322 -- -- -- -- --
176.28 0.621 13 -- 0.819 -- -- -- 0.168 20.1 -- -- -- --
185 0.633 13 -- -- 0.879 -- -- 0.067 -- -1.749 871 -- --
213.04 0.681 13 -- -- -- -- -- 0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.31 temperature 15.0 30 > th dose dependent rect. 4 5
5 95.25 radiation 1.0 10 > th dose independent rect. 9 6
6 95.36 temperature 15.0 10 > th dose independent rect. 15 18
8 95.48 wind 1.0 30 > th dose independent rect. 9 6
11 95.54 temperature 10.0 10 > th dose independent rect. 9 6
13 95.54 atmosphere 995.0 10 > th dose independent rect. 9 6
14 95.54 atmosphere 1015.0 10 < th dose independent rect. 9 6
15 95.54 precipitation 0.1 10 < th dose independent rect. 9 6
17 95.54 precipitation 0.1 10 < th dose dependent rect. 9 6
18 95.58 temperature 10.0 10 > th dose dependent rect. 9 6
20 95.62 wind 5.0 30 < th dose independent rect. 4 5
28 95.74 temperature 10.0 1440 > th dose independent rect. 10 6
31 95.74 temperature 10.0 1440 > th dose independent rect. 16 18
34 95.86 humidity 90.0 10 < th dose independent rect. 2 7
38 95.99 precipitation 0.1 10 < th dose independent rect. 15 18
39 95.99 precipitation 0.1 10 < th dose dependent rect. 15 18
40 96.02 humidity 50.0 30 > th dose independent rect. 9 6
45 96.10 wind 9.0 30 < th dose independent rect. 15 18
50 96.19 atmosphere 995.0 10 > th dose independent rect. 15 18
67 96.31 atmosphere 1000.0 30 > th dose dependent rect. 4 5
68 96.32 wind 5.0 270 < th dose independent rect. 3 4
79 96.38 precipitation 0.1 30 < th dose independent rect. 4 5
80 96.38 radiation 1.0 30 > th dose independent rect. 18 15
81 96.38 precipitation 0.1 30 < th dose dependent rect. 4 5
86 96.42 temperature 10.0 30 > th dose independent rect. 4 5
88 96.42 temperature 30.0 30 < th dose independent rect. 4 5
89 96.42 humidity 50.0 30 > th dose independent rect. 4 5
91 96.42 atmosphere 995.0 30 > th dose independent rect. 4 5
92 96.42 atmosphere 1015.0 30 < th dose independent rect. 4 5
93 96.42 temperature 10.0 30 > th dose independent rect. 9 19
94 96.42 temperature 10.0 30 > th dose dependent rect. 9 19
95 96.45 wind 9.0 30 < th dose independent rect. 9 6
96 96.47 radiation 40.0 10 < th dose independent rect. 15 18
102 96.54 precipitation 0.1 30 < th dose independent rect. 9 19
103 96.54 precipitation 0.1 30 < th dose dependent rect. 9 19
106 96.57 temperature 15.0 270 > th dose independent rect. 3 14
119 96.76 wind 9.0 30 < th dose independent rect. 9 19
123 96.83 wind 5.0 270 < th dose independent rect. 4 1
124 96.89 radiation 40.0 30 < th dose independent rect. 4 5
125 96.90 radiation 1.0 30 > th dose independent rect. 5 4
143 96.97 atmosphere 995.0 30 > th dose independent rect. 9 19
147 97.01 humidity 50.0 30 > th dose independent rect. 9 19
148 97.02 radiation 10.0 270 < th dose independent rect. 17 10
153 97.05 precipitation 0.1 270 < th dose independent rect. 3 14
154 97.05 temperature 10.0 270 > th dose dependent rect. 9 1
155 97.05 precipitation 0.1 270 < th dose dependent rect. 3 14
164 97.12 precipitation 0.1 270 < th dose independent rect. 3 4
166 97.12 precipitation 0.1 270 < th dose dependent rect. 3 4
178 97.16 wind 9.0 30 < th dose dependent rect. 4 5
198 97.34 atmosphere 1000.0 270 > th dose dependent rect. 3 4
206 97.39 wind 7.0 270 < th dose independent rect. 17 10
210 97.40 humidity 50.0 270 > th dose independent rect. 9 1
217 97.42 humidity 50.0 10 > th dose independent rect. 15 18
218 97.42 wind 9.0 270 < th dose dependent rect. 3 4
221 97.43 radiation 1.0 30 > th dose independent rect. 15 18
224 97.46 radiation 1.0 10 > th dose dependent rect. 16 17
225 97.49 humidity 50.0 270 > th dose independent rect. 7 20
226 97.49 radiation 30.0 270 < th dose dependent rect. 17 10
241 97.57 wind 9.0 270 < th dose independent rect. 7 20
243 97.58 temperature 10.0 270 > th dose independent rect. 9 1
244 97.58 atmosphere 995.0 270 > th dose independent rect. 9 1
245 97.58 atmosphere 1015.0 270 < th dose independent rect. 9 1
246 97.58 temperature 10.0 270 > th dose independent rect. 10 23
262 97.60 temperature 10.0 270 > th dose dependent rect. 4 2
268 97.62 temperature 10.0 270 > th dose independent rect. 3 4
271 97.62 humidity 50.0 270 > th dose independent rect. 3 4
273 97.62 atmosphere 995.0 270 > th dose independent rect. 3 4
274 97.62 atmosphere 1015.0 270 < th dose independent rect. 3 4
277 97.62 temperature 10.0 270 > th dose independent rect. 7 20
278 97.63 temperature 10.0 1440 > th dose independent rect. 5 5
281 97.63 atmosphere 995.0 1440 > th dose independent rect. 5 5
282 97.63 atmosphere 1015.0 1440 < th dose independent rect. 5 5
283 97.63 temperature 10.0 1440 > th dose independent rect. 10 19
288 97.66 precipitation 0.1 270 < th dose independent rect. 9 1
291 97.66 precipitation 0.1 270 < th dose dependent rect. 9 1
295 97.68 temperature 10.0 270 > th dose independent rect. 17 10
300 97.68 atmosphere 1015.0 270 < th dose independent rect. 3 14
310 97.72 wind 9.0 270 < th dose independent rect. 9 1
325 97.77 precipitation 0.1 270 < th dose independent rect. 4 1
326 97.77 humidity 50.0 270 > th dose independent rect. 17 10
328 97.77 precipitation 0.1 270 < th dose dependent rect. 4 1
329 97.77 radiation 40.0 270 < th dose dependent rect. 3 4
330 97.78 atmosphere 1015.0 30 < th dose independent rect. 9 19
332 97.80 wind 1.0 270 > th dose independent rect. 9 1
337 97.82 atmosphere 1005.0 270 > th dose independent rect. 3 4
355 97.92 wind 9.0 270 < th dose dependent rect. 4 1
362 97.96 humidity 90.0 10 < th dose dependent rect. 15 18
363 97.98 atmosphere 1005.0 30 > th dose independent rect. 4 5
365 97.98 wind 9.0 270 < th dose independent rect. 3 14
367 97.98 atmosphere 1000.0 270 > th dose dependent rect. 4 2
370 98.00 precipitation 0.1 270 < th dose independent rect. 7 20
373 98.00 precipitation 0.1 270 < th dose dependent rect. 7 20
380 98.02 radiation 1.0 270 < th dose dependent rect. 4 1
386 98.10 atmosphere 1015.0 10 < th dose independent rect. 15 18
401 98.13 temperature 10.0 270 > th dose independent rect. 4 1
403 98.13 temperature 30.0 270 < th dose independent rect. 4 1
404 98.13 humidity 50.0 270 > th dose independent rect. 4 1
407 98.13 atmosphere 995.0 270 > th dose independent rect. 4 1
408 98.13 atmosphere 1010.0 270 < th dose independent rect. 4 1
410 98.13 radiation 20.0 270 < th dose independent rect. 4 1
413 98.13 temperature 10.0 270 > th dose independent rect. 5 23
418 98.15 radiation 30.0 270 < th dose dependent rect. 4 1
433 98.24 radiation 1.0 270 < th dose independent rect. 4 1
462 98.36 atmosphere 995.0 270 > th dose independent rect. 17 10
472 98.38 precipitation 0.1 270 < th dose independent rect. 17 10
474 98.38 precipitation 0.1 270 < th dose dependent rect. 17 10
504 98.48 radiation 1.0 90 > th dose independent sin 12 NA
548 98.55 precipitation 0.1 270 < th dose independent rect. 10 23
550 98.55 precipitation 0.1 270 < th dose dependent rect. 10 23
564 98.61 radiation 1.0 30 > th dose dependent rect. 5 4
599 98.63 temperature 25.0 30 > th dose independent rect. 1 8
650 98.73 atmosphere 995.0 270 > th dose independent rect. 7 20
667 98.78 radiation 40.0 90 < th dose independent rect. 4 15
670 98.81 atmosphere 1005.0 270 > th dose independent rect. 4 2
671 98.81 temperature 30.0 270 < th dose independent rect. 18 9
680 98.84 wind 1.0 270 > th dose independent rect. 3 4
703 98.87 humidity 50.0 270 > th dose dependent rect. 4 1
715 98.91 humidity 90.0 30 < th dose independent rect. 9 6
758 99.08 precipitation 0.1 270 < th dose independent rect. 12 20
761 99.08 precipitation 0.1 270 < th dose dependent rect. 12 20
797 99.18 radiation 1.0 270 > th dose independent rect. 9 1
803 99.19 temperature 15.0 270 > th dose independent rect. 12 20
842 99.27 humidity 50.0 270 > th dose dependent rect. 3 4
862 99.35 radiation 40.0 10 < th dose independent rect. 5 15
943 99.57 wind 9.0 270 < th dose independent rect. 10 23
965 99.63 humidity 90.0 10 < th dose independent rect. 14 19
966 99.63 wind 1.0 270 > th dose independent rect. 12 20
994 99.71 wind 1.0 270 > th dose independent rect. 13 18
995 99.71 wind 9.0 270 < th dose independent rect. 12 20