Os02g0228600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0228600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.55 | 0.427 | 8.63 | 0.705 | 1.39 | 0.88 | 1.59 | 0.483 | 0.425 | 0.415 | 71.13 | 1183 | -- | -- |
| 82.58 | 0.423 | 8.62 | 0.78 | 1.42 | 0.945 | 1.5 | -- | 0.447 | 0.237 | 71.1 | 1111 | -- | -- |
| 91.93 | 0.447 | 8.63 | 0.71 | 1.39 | 0.935 | -- | -0.328 | 0.431 | 0.338 | 71 | 1109 | -- | -- |
| 91.99 | 0.447 | 8.63 | 0.707 | 1.44 | 0.921 | -- | -- | 0.427 | 0.327 | 71.56 | 1107 | -- | -- |
| 140.8 | 0.556 | 8.63 | 0.628 | -- | 0.726 | -- | 0.587 | 0.334 | -- | 75.95 | 3116 | -- | -- |
| 110.19 | 0.492 | 8.64 | 0.59 | 1.14 | -- | 1.34 | -- | 0.32 | 0.437 | -- | -- | -- | -- |
| 117.8 | 0.508 | 8.65 | 0.538 | 1.14 | -- | -- | -- | 0.313 | 0.563 | -- | -- | -- | -- |
| 140.6 | 0.555 | 8.63 | 0.645 | -- | 0.738 | -- | -- | 0.327 | -- | 76.68 | 3126 | -- | -- |
| 104.51 | 0.476 | 8.62 | -- | 1.44 | 0.882 | -- | -- | 0.364 | 0.425 | 72 | 1107 | -- | -- |
| 199.47 | 0.66 | 8.62 | 0.578 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 125.43 | 0.524 | 8.66 | -- | 1.15 | -- | -- | -- | 0.253 | 0.586 | -- | -- | -- | -- |
| 151.53 | 0.575 | 8.64 | -- | -- | 0.723 | -- | -- | 0.256 | -- | 76.68 | 3126 | -- | -- |
| 208.28 | 0.674 | 8.64 | -- | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.07 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 3 | 80.11 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 6 | 80.43 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 11 | 80.54 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 44 | 83.03 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 56 | 83.45 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 63 | 83.61 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 88 | 84.34 | humidity | 50.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 89 | 84.35 | humidity | 70.0 | 720 | > th | dose independent | sin | 15 | NA |
| 103 | 84.46 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 11 |
| 149 | 85.02 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 18 |
| 158 | 85.15 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 6 |
| 215 | 85.53 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 238 | 85.82 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 255 | 85.89 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 259 | 85.91 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 271 | 86.01 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 276 | 86.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 278 | 86.03 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 280 | 86.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 283 | 86.04 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 316 | 86.10 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 339 | 86.19 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 343 | 86.24 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 351 | 86.29 | humidity | 90.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 397 | 86.42 | humidity | 70.0 | 720 | < th | dose independent | sin | 15 | NA |
| 415 | 86.51 | humidity | 60.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 451 | 86.68 | humidity | 60.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 456 | 86.70 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 507 | 86.83 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 609 | 87.27 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 612 | 87.28 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 814 | 87.89 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 891 | 88.04 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 922 | 88.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 936 | 88.13 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 939 | 88.13 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 11 |