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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0227700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.02 (0.0483) R2 : 0.762
β1 : 6.59 (0.217) R2dD : 1.1 R2D : 0.13
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.44 (0.299) R2dE : 0.279 R2E : -0.0523
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -13.1 (1.04) R2dD*E : 0.548 R2D*E : -1.28
γ1 : 1.94 (0.093) R2dN8 : 0.36 R2N8 : 0.0245
σ : 0.748
deviance : 257.93
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.07323
memory length : 4325
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.2 0.754 5.03 6.63 0.127 -3.33 -0.322 -12.9 1.94 10.5 0.1333 4325 -- --
335.4 0.853 5.38 5.01 0.0253 -0.899 -0.66 -- 1.54 13.2 14.22 4372 -- --
256.44 0.746 5.02 6.56 0.189 -3.43 -- -13.1 1.93 9.54 0.07446 4310 -- --
316.58 0.829 5.42 4.93 0.00618 -0.846 -- -- 1.38 13 13.71 17382 -- --
257.93 0.748 5.02 6.59 -- -3.44 -- -13.1 1.94 -- 0.07323 4325 -- --
349.91 0.877 5.34 4.87 0.0638 -- 0.696 -- 1.7 3.45 -- -- -- --
350.42 0.877 5.34 4.86 0.154 -- -- -- 1.69 7.36 -- -- -- --
316.38 0.828 5.42 4.92 -- -0.884 -- -- 1.35 -- 12.59 17371 -- --
943.31 1.43 5.55 -- 0.0748 -0.936 -- -- 0.798 0.668 14.8 18865 -- --
351.68 0.876 5.34 4.86 -- -- -- -- 1.7 -- -- -- -- --
973.1 1.46 5.46 -- 0.217 -- -- -- 1.15 5.84 -- -- -- --
379.25 0.907 5.7 -- -- -3.81 -- -- 0.107 -- 0.009699 47520 -- --
975.54 1.46 5.46 -- -- -- -- -- 1.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.33 wind 1.0 43200 < th dose independent rect. 12 2
2 246.90 humidity 90.0 14400 < th dose independent rect. 23 3
3 246.94 humidity 90.0 14400 > th dose independent rect. 24 2
6 248.77 radiation 1.0 43200 < th dose dependent rect. 18 17
7 248.82 radiation 40.0 43200 < th dose dependent rect. 18 8
10 248.85 radiation 40.0 43200 < th dose dependent rect. 18 4
36 249.18 radiation 40.0 43200 < th dose dependent rect. 18 1
41 249.22 radiation 1.0 43200 < th dose dependent rect. 20 15
45 249.24 radiation 1.0 43200 < th dose dependent rect. 22 13
47 249.25 radiation 1.0 43200 < th dose dependent rect. 3 8
48 249.25 radiation 1.0 43200 < th dose dependent rect. 1 10
84 249.89 radiation 1.0 43200 < th dose dependent sin 8 NA
85 249.94 humidity 90.0 14400 < th dose independent rect. 23 8
102 250.25 wind 1.0 43200 > th dose independent rect. 12 2
118 250.44 temperature 20.0 14400 < th dose dependent rect. 6 1
128 251.02 wind 1.0 43200 < th dose independent rect. 12 5
165 251.50 humidity 80.0 43200 < th dose independent rect. 17 3
170 251.59 humidity 90.0 14400 < th dose independent rect. 1 1
174 251.70 atmosphere 1010.0 43200 > th dose dependent rect. 20 1
183 251.90 radiation 1.0 43200 < th dose independent rect. 18 11
185 251.99 radiation 1.0 43200 < th dose dependent rect. 7 23
195 252.17 radiation 1.0 43200 < th dose dependent rect. 3 23
196 252.18 radiation 1.0 43200 < th dose dependent no NA NA
198 252.18 radiation 1.0 43200 < th dose dependent rect. 23 22
200 252.18 radiation 1.0 43200 < th dose dependent rect. 20 23
204 252.19 radiation 1.0 43200 < th dose dependent rect. 23 20
228 252.21 radiation 1.0 43200 < th dose dependent rect. 4 17
246 252.29 wind 1.0 43200 > th dose independent rect. 12 5
255 252.41 radiation 1.0 43200 < th dose dependent rect. 10 23
263 252.59 humidity 80.0 43200 > th dose independent rect. 17 3
287 252.77 radiation 1.0 43200 < th dose dependent rect. 16 13
311 252.97 humidity 60.0 43200 > th dose independent rect. 7 2
329 253.05 radiation 1.0 43200 < th dose dependent rect. 7 19
346 253.13 radiation 1.0 43200 < th dose dependent rect. 7 14
354 253.18 radiation 1.0 43200 > th dose independent rect. 7 1
388 253.45 radiation 1.0 43200 < th dose independent rect. 7 1
391 253.46 atmosphere 1010.0 43200 > th dose dependent sin 16 NA
423 253.61 radiation 1.0 43200 < th dose dependent rect. 16 10
451 253.71 radiation 1.0 43200 < th dose dependent rect. 16 5
459 253.73 radiation 1.0 43200 < th dose dependent rect. 16 3
530 253.86 temperature 20.0 14400 < th dose dependent rect. 5 3
592 253.99 radiation 1.0 43200 < th dose independent rect. 18 18
622 254.03 atmosphere 1010.0 43200 > th dose dependent rect. 18 22
629 254.05 radiation 10.0 43200 > th dose independent rect. 17 13
646 254.07 atmosphere 1010.0 43200 > th dose dependent no NA NA
682 254.13 radiation 30.0 43200 > th dose independent rect. 16 1
723 254.20 radiation 1.0 43200 < th dose independent rect. 18 4
734 254.22 atmosphere 1010.0 43200 > th dose dependent rect. 13 2
739 254.24 atmosphere 1010.0 43200 > th dose independent rect. 22 1
740 254.24 atmosphere 1010.0 43200 < th dose independent rect. 23 1
744 254.25 radiation 1.0 43200 < th dose independent rect. 18 1
785 254.39 atmosphere 1010.0 43200 > th dose dependent rect. 7 1
813 254.46 atmosphere 1010.0 43200 > th dose dependent rect. 11 5
824 254.50 atmosphere 1010.0 43200 > th dose independent rect. 15 1
825 254.51 atmosphere 1010.0 43200 > th dose dependent rect. 5 1
838 254.53 precipitation 0.1 43200 < th dose independent rect. 4 1
839 254.53 atmosphere 1010.0 43200 < th dose independent rect. 22 8
840 254.53 precipitation 0.1 43200 < th dose dependent rect. 4 1
851 254.55 atmosphere 1010.0 43200 < th dose independent rect. 22 6
852 254.55 atmosphere 1010.0 43200 > th dose dependent rect. 5 3
856 254.56 humidity 70.0 43200 < th dose independent rect. 7 1
880 254.61 wind 1.0 43200 > th dose independent rect. 12 7
892 254.62 atmosphere 1010.0 43200 > th dose dependent rect. 5 11
895 254.64 precipitation 0.1 43200 > th dose independent rect. 4 1
896 254.64 radiation 1.0 43200 > th dose independent rect. 18 11
897 254.64 atmosphere 1010.0 43200 > th dose dependent rect. 7 9
935 254.71 atmosphere 1010.0 43200 < th dose independent rect. 2 1
949 254.74 atmosphere 1010.0 43200 < th dose independent rect. 22 3
951 254.74 atmosphere 1010.0 43200 > th dose dependent rect. 11 1
955 254.75 atmosphere 1010.0 43200 < th dose independent rect. 5 1
975 254.80 radiation 1.0 43200 > th dose independent rect. 18 18
996 254.85 atmosphere 1010.0 43200 < th dose independent rect. 2 4