Os02g0227600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os02g0227600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.97 | 0.523 | 3.45 | 0.164 | 0.204 | -1.65 | -0.482 | 3.23 | -0.151 | 13.4 | 51.6 | 287 | -- | -- |
| 125.5 | 0.522 | 3.44 | 0.241 | 0.201 | -1.07 | -0.6 | -- | -0.159 | 13.6 | 52 | 338 | -- | -- |
| 124.73 | 0.52 | 3.46 | 0.146 | 0.221 | -1.63 | -- | 3.58 | -0.155 | 14.4 | 51.37 | 287 | -- | -- |
| 126.33 | 0.523 | 3.44 | 0.247 | 0.202 | -0.779 | -- | -- | -0.168 | 14.4 | 54 | 313 | -- | -- |
| 127.07 | 0.525 | 3.46 | 0.14 | -- | -1.46 | -- | 3.28 | -0.15 | -- | 52.15 | 257 | -- | -- |
| 135.55 | 0.546 | 3.45 | 0.334 | 0.353 | -- | 0.0864 | -- | -0.205 | 16.1 | -- | -- | -- | -- |
| 135.56 | 0.545 | 3.45 | 0.335 | 0.352 | -- | -- | -- | -0.204 | 16 | -- | -- | -- | -- |
| 128.61 | 0.528 | 3.44 | 0.24 | -- | -0.859 | -- | -- | -0.152 | -- | 56 | 351 | -- | -- |
| 127.87 | 0.527 | 3.44 | -- | 0.202 | -0.825 | -- | -- | -0.184 | 14.4 | 52.87 | 331 | -- | -- |
| 142.34 | 0.557 | 3.45 | 0.321 | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
| 138.52 | 0.551 | 3.46 | -- | 0.346 | -- | -- | -- | -0.242 | 16 | -- | -- | -- | -- |
| 130.1 | 0.531 | 3.44 | -- | -- | -0.892 | -- | -- | -0.175 | -- | 55.63 | 351 | -- | -- |
| 145.05 | 0.562 | 3.46 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.46 | humidity | 70 | 90 | < th | dose dependent | rect. | 16 | 4 |
| 15 | 115.43 | humidity | 70 | 90 | < th | dose independent | rect. | 16 | 2 |
| 29 | 116.43 | humidity | 70 | 90 | < th | dose independent | rect. | 16 | 4 |
| 152 | 118.14 | humidity | 80 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 182 | 118.35 | wind | 3 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 239 | 118.93 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 16 | 1 |
| 245 | 119.02 | radiation | 1 | 90 | > th | dose independent | rect. | 16 | 13 |
| 248 | 119.06 | radiation | 1 | 90 | > th | dose independent | rect. | 16 | 3 |
| 303 | 119.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 2 |
| 339 | 120.47 | humidity | 80 | 270 | < th | dose dependent | rect. | 14 | 4 |
| 340 | 120.48 | wind | 1 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 341 | 120.50 | wind | 1 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 346 | 120.63 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 2 |
| 357 | 120.82 | humidity | 70 | 270 | < th | dose independent | rect. | 14 | 4 |
| 364 | 120.90 | wind | 1 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 390 | 121.13 | humidity | 80 | 270 | < th | dose dependent | rect. | 14 | 19 |
| 391 | 121.14 | radiation | 20 | 270 | < th | dose dependent | sin | 13 | NA |
| 403 | 121.17 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 421 | 121.34 | humidity | 70 | 90 | < th | dose independent | sin | 13 | NA |
| 460 | 121.49 | radiation | 10 | 270 | < th | dose independent | sin | 13 | NA |
| 469 | 121.55 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 474 | 121.58 | humidity | 70 | 90 | > th | dose independent | sin | 12 | NA |
| 477 | 121.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 486 | 121.65 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 20 |
| 491 | 121.68 | humidity | 50 | 90 | > th | dose independent | rect. | 11 | 23 |
| 536 | 121.93 | radiation | 10 | 270 | > th | dose independent | sin | 13 | NA |
| 542 | 121.95 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 18 |
| 578 | 122.01 | radiation | 1 | 270 | > th | dose dependent | sin | 13 | NA |
| 619 | 122.22 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 9 |
| 644 | 122.26 | radiation | 30 | 270 | > th | dose independent | rect. | 14 | 1 |
| 646 | 122.27 | radiation | 10 | 270 | > th | dose independent | rect. | 14 | 17 |
| 647 | 122.27 | radiation | 20 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 689 | 122.37 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 699 | 122.38 | wind | 3 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 725 | 122.43 | wind | 3 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 755 | 122.51 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 770 | 122.57 | temperature | 30 | 30 | < th | dose independent | rect. | 12 | 22 |
| 789 | 122.66 | humidity | 80 | 30 | < th | dose dependent | sin | 12 | NA |
| 819 | 122.72 | radiation | 1 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 828 | 122.74 | wind | 1 | 90 | > th | dose dependent | rect. | 12 | 22 |
| 831 | 122.75 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 5 |
| 850 | 122.76 | radiation | 1 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 896 | 122.82 | temperature | 10 | 90 | > th | dose dependent | rect. | 16 | 18 |
| 941 | 122.92 | radiation | 10 | 270 | > th | dose independent | rect. | 14 | 4 |
| 978 | 122.95 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 16 | 2 |
| 1000 | 122.99 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 5 |