Os02g0227200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Early nodulin.
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Os02g0227200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Early nodulin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.91 | 0.345 | 12.4 | -0.0184 | 0.819 | -0.659 | 0.154 | -0.0654 | 0.181 | 23.2 | 25.2 | 1389 | -- | -- |
| 53.9 | 0.342 | 12.4 | -0.00689 | 0.819 | -0.658 | 0.155 | -- | 0.186 | 23.2 | 25.3 | 1368 | -- | -- |
| 54 | 0.342 | 12.4 | -0.014 | 0.821 | -0.659 | -- | -0.0271 | 0.184 | 23.2 | 25.2 | 1379 | -- | -- |
| 54 | 0.342 | 12.4 | -0.00549 | 0.825 | -0.667 | -- | -- | 0.187 | 23.2 | 25.25 | 1366 | -- | -- |
| 88.1 | 0.44 | 12.4 | -0.0982 | -- | -0.423 | -- | -0.015 | 0.168 | -- | 24.8 | 1560 | -- | -- |
| 67.41 | 0.385 | 12.5 | -0.22 | 0.777 | -- | 0.114 | -- | -0.0466 | 22.8 | -- | -- | -- | -- |
| 67.47 | 0.385 | 12.5 | -0.225 | 0.776 | -- | -- | -- | -0.0469 | 22.8 | -- | -- | -- | -- |
| 87.34 | 0.437 | 12.4 | -0.132 | -- | -0.435 | -- | -- | 0.188 | -- | 25.02 | 1559 | -- | -- |
| 54 | 0.342 | 12.4 | -- | 0.825 | -0.668 | -- | -- | 0.188 | 23.2 | 25.25 | 1366 | -- | -- |
| 104.8 | 0.478 | 12.5 | -0.209 | -- | -- | -- | -- | -0.0419 | -- | -- | -- | -- | -- |
| 68.8 | 0.388 | 12.5 | -- | 0.774 | -- | -- | -- | -0.0219 | 22.8 | -- | -- | -- | -- |
| 87.79 | 0.438 | 12.4 | -- | -- | -0.442 | -- | -- | 0.206 | -- | 25.02 | 1559 | -- | -- |
| 105.95 | 0.48 | 12.5 | -- | -- | -- | -- | -- | -0.0188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.34 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 8 | 53.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 10 | 53.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 18 | 53.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 43 | 53.83 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 58 | 53.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 59 | 53.94 | temperature | 25 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 64 | 53.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 76 | 53.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 93 | 54.04 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 96 | 54.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 22 |
| 98 | 54.05 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 128 | 54.12 | temperature | 20 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 134 | 54.13 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 135 | 54.13 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 145 | 54.15 | temperature | 25 | 1440 | > th | dose independent | sin | 4 | NA |
| 148 | 54.15 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 164 | 54.18 | humidity | 80 | 43200 | > th | dose dependent | sin | 12 | NA |
| 167 | 54.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 168 | 54.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 196 | 54.22 | radiation | 20 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 204 | 54.23 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 207 | 54.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 225 | 54.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 232 | 54.25 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 249 | 54.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 7 |
| 268 | 54.27 | temperature | 20 | 43200 | > th | dose dependent | rect. | 21 | 7 |
| 276 | 54.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 283 | 54.28 | temperature | 20 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 326 | 54.31 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 332 | 54.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 333 | 54.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 340 | 54.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 342 | 54.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 359 | 54.32 | radiation | 40 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 380 | 54.33 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 386 | 54.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 396 | 54.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 425 | 54.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 431 | 54.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 432 | 54.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 493 | 54.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 494 | 54.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 534 | 54.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 17 |
| 568 | 54.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 587 | 54.43 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 594 | 54.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 610 | 54.44 | temperature | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 657 | 54.45 | temperature | 20 | 43200 | < th | dose dependent | sin | 10 | NA |
| 659 | 54.45 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 667 | 54.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 14 |
| 678 | 54.46 | temperature | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 712 | 54.47 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 716 | 54.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 810 | 54.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 925 | 54.53 | temperature | 25 | 1440 | < th | dose independent | sin | 4 | NA |
| 943 | 54.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 944 | 54.53 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |