Os02g0226900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os02g0226900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.13 | 0.444 | 6.61 | 1.65 | 0.729 | 0.36 | 1.06 | 2.83 | 0.258 | 14.2 | 21 | 7443 | -- | -- |
| 93.68 | 0.451 | 6.7 | 1.51 | 0.75 | -0.528 | 1.13 | -- | 0.228 | 13.8 | 14.11 | 46049 | -- | -- |
| 93.04 | 0.449 | 6.61 | 1.69 | 0.735 | 0.347 | -- | 2.82 | 0.267 | 14.5 | 21 | 7478 | -- | -- |
| 96.57 | 0.458 | 6.72 | 1.64 | 0.731 | -0.657 | -- | -- | 0.255 | 14.6 | 14.3 | 47520 | -- | -- |
| 121.68 | 0.517 | 6.74 | 1.29 | -- | 0.271 | -- | 1.24 | 0.086 | -- | 21 | 7476 | -- | -- |
| 98.56 | 0.465 | 6.76 | 1.06 | 0.725 | -- | 1.05 | -- | 0.0877 | 14.3 | -- | -- | -- | -- |
| 102.43 | 0.474 | 6.76 | 1.1 | 0.734 | -- | -- | -- | 0.0947 | 14.6 | -- | -- | -- | -- |
| 127.72 | 0.526 | 6.72 | 1.69 | -- | -0.704 | -- | -- | 0.255 | -- | 14.75 | 47520 | -- | -- |
| 114.27 | 0.498 | 6.83 | -- | 0.745 | 0.663 | -- | -- | -0.246 | 14.5 | 21.19 | 47520 | -- | -- |
| 134.02 | 0.541 | 6.76 | 1.06 | -- | -- | -- | -- | 0.0763 | -- | -- | -- | -- | -- |
| 134.03 | 0.542 | 6.78 | -- | 0.713 | -- | -- | -- | -0.0273 | 14.5 | -- | -- | -- | -- |
| 146.58 | 0.564 | 6.83 | -- | -- | 0.61 | -- | -- | -0.251 | -- | 21.72 | 47520 | -- | -- |
| 163.88 | 0.598 | 6.79 | -- | -- | -- | -- | -- | -0.0417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 3 | 87.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 30 | 88.44 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 35 | 88.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 37 | 88.52 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 41 | 88.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 42 | 88.54 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 71 | 88.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 82 | 88.75 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 97 | 88.79 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 102 | 88.80 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 105 | 88.80 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 126 | 88.84 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 137 | 88.86 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 146 | 88.87 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 147 | 88.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 5 | 20 |
| 161 | 88.89 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 2 | NA |
| 172 | 88.89 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 185 | 88.90 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 261 | 88.95 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 272 | 88.95 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 309 | 88.97 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 311 | 88.97 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 313 | 88.97 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 315 | 88.98 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 334 | 88.98 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 337 | 88.99 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 408 | 89.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 433 | 89.04 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 1 | NA |
| 481 | 89.07 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 14 | NA |
| 522 | 89.10 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 607 | 89.15 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 612 | 89.16 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 690 | 89.20 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 733 | 89.23 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 741 | 89.24 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 13 | NA |
| 783 | 89.26 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 806 | 89.28 | wind | 5 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 851 | 89.31 | wind | 5 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 859 | 89.31 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 923 | 89.36 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 6 |