Os02g0226500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0226500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.03 | 0.508 | 10.2 | 1.1 | 1.83 | -2.54 | -2.75 | 0.286 | 0.208 | 22.3 | 30.01 | 308 | -- | -- |
| 117.12 | 0.504 | 10.2 | 1.13 | 1.82 | -2.53 | -2.73 | -- | 0.222 | 22.3 | 29.95 | 313 | -- | -- |
| 147.18 | 0.565 | 10.2 | 1.24 | 1.85 | -2.52 | -- | 0.0595 | 0.221 | 22.3 | 29.67 | 305 | -- | -- |
| 147.17 | 0.565 | 10.2 | 1.26 | 1.86 | -2.51 | -- | -- | 0.221 | 22.3 | 29.59 | 304 | -- | -- |
| 264.15 | 0.757 | 10.3 | 0.467 | -- | -3.57 | -- | 2.63 | -0.0681 | -- | 30.54 | 650 | -- | -- |
| 204.43 | 0.67 | 10.1 | 1.79 | 2.08 | -- | -2.73 | -- | 0.729 | 21 | -- | -- | -- | -- |
| 229.79 | 0.71 | 10.1 | 1.89 | 2.1 | -- | -- | -- | 0.733 | 20.9 | -- | -- | -- | -- |
| 269.5 | 0.765 | 10.2 | 0.95 | -- | -3.56 | -- | -- | 0.0193 | -- | 29.76 | 638 | -- | -- |
| 184.44 | 0.633 | 10.3 | -- | 1.78 | -3.08 | -- | -- | -0.0368 | 22.6 | 29.2 | 338 | -- | -- |
| 481.48 | 1.03 | 10 | 1.89 | -- | -- | -- | -- | 0.718 | -- | -- | -- | -- | -- |
| 323.96 | 0.842 | 10.2 | -- | 2.1 | -- | -- | -- | 0.522 | 20.9 | -- | -- | -- | -- |
| 291.4 | 0.795 | 10.2 | -- | -- | -3.91 | -- | -- | -0.165 | -- | 29.51 | 625 | -- | -- |
| 575.69 | 1.12 | 10.1 | -- | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.68 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 3 | 109.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 4 | 110.72 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 15 | 112.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 16 | 112.09 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 56 | 114.14 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 64 | 114.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 22 |
| 68 | 114.68 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 19 |
| 76 | 114.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 90 | 115.33 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 175 | 117.13 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 9 |
| 187 | 117.25 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 190 | 117.31 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 194 | 117.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 210 | 117.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 234 | 118.13 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 415 | 120.76 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 418 | 120.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 468 | 121.47 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 17 |
| 615 | 123.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |