Os02g0226400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0226400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.93 | 0.499 | 7.87 | 0.712 | 1.26 | -1.16 | -1.28 | 1.79 | 0.0614 | 23 | -0.07791 | 10 | -- | -- |
| 115.1 | 0.504 | 7.87 | 0.748 | 1.25 | -1.23 | -2.35 | -- | 0.0649 | 23.1 | -15.14 | 9 | -- | -- |
| 113.29 | 0.5 | 7.87 | 0.757 | 1.34 | -1.11 | -- | 3.43 | 0.0658 | 23.1 | -7.247 | 9 | -- | -- |
| 136.05 | 0.543 | 7.86 | 0.795 | 1.19 | -1.34 | -- | -- | 0.106 | 22.8 | -6.967 | 48 | -- | -- |
| 157.99 | 0.585 | 7.83 | 0.727 | -- | -2.49 | -- | 2.76 | 0.144 | -- | -4.715 | 45 | -- | -- |
| 135.75 | 0.546 | 7.89 | 0.725 | 1.88 | -- | -2.25 | -- | 0.0652 | 23.4 | -- | -- | -- | -- |
| 157.47 | 0.588 | 7.88 | 0.817 | 1.9 | -- | -- | -- | 0.0743 | 23.4 | -- | -- | -- | -- |
| 175.19 | 0.616 | 7.82 | 0.815 | -- | -2.56 | -- | -- | 0.145 | -- | -1.068 | 47 | -- | -- |
| 153.53 | 0.577 | 7.88 | -- | 1.18 | -1.37 | -- | -- | 0.0221 | 22.8 | -8.174 | 49 | -- | -- |
| 382.68 | 0.914 | 7.84 | 0.866 | -- | -- | -- | -- | 0.0934 | -- | -- | -- | -- | -- |
| 175.06 | 0.619 | 7.9 | -- | 1.9 | -- | -- | -- | -0.0167 | 23.4 | -- | -- | -- | -- |
| 192.7 | 0.647 | 7.84 | -- | -- | -2.57 | -- | -- | 0.0545 | -- | -25.14 | 47 | -- | -- |
| 402.46 | 0.936 | 7.86 | -- | -- | -- | -- | -- | -0.00271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.84 | humidity | 90 | 90 | < th | dose dependent | sin | 4 | NA |
| 12 | 106.05 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 18 |
| 13 | 106.20 | humidity | 50 | 30 | > th | dose dependent | sin | 3 | NA |
| 17 | 106.40 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 7 |
| 26 | 106.67 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 16 |
| 48 | 107.16 | humidity | 80 | 10 | > th | dose independent | rect. | 3 | 17 |
| 50 | 107.20 | humidity | 90 | 90 | < th | dose dependent | rect. | 24 | 14 |
| 83 | 107.74 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 5 |
| 92 | 107.90 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 109 | 108.10 | humidity | 80 | 10 | > th | dose independent | rect. | 3 | 15 |
| 112 | 108.12 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 127 | 108.32 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 157 | 108.71 | humidity | 80 | 10 | > th | dose independent | sin | 2 | NA |
| 158 | 108.72 | humidity | 80 | 10 | > th | dose independent | rect. | 3 | 13 |
| 175 | 108.90 | humidity | 80 | 10 | < th | dose independent | sin | 2 | NA |
| 186 | 109.08 | humidity | 60 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 193 | 109.21 | radiation | 1 | 10 | > th | dose dependent | sin | 5 | NA |
| 202 | 109.28 | radiation | 40 | 10 | < th | dose dependent | sin | 4 | NA |
| 226 | 109.53 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 3 |
| 234 | 109.70 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 8 |
| 259 | 109.84 | humidity | 50 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 263 | 109.91 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 14 |
| 285 | 110.01 | humidity | 90 | 30 | < th | dose dependent | rect. | 9 | 3 |
| 333 | 110.35 | humidity | 50 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 334 | 110.35 | radiation | 40 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 339 | 110.38 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 369 | 110.57 | radiation | 40 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 394 | 110.77 | humidity | 80 | 90 | < th | dose independent | sin | 3 | NA |
| 403 | 110.83 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 452 | 111.18 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 480 | 111.31 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 10 |
| 496 | 111.40 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 498 | 111.40 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 499 | 111.41 | humidity | 80 | 90 | < th | dose independent | rect. | 5 | 9 |
| 529 | 111.52 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 17 |
| 598 | 111.80 | humidity | 80 | 90 | < th | dose independent | rect. | 1 | 13 |
| 605 | 111.82 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 678 | 112.09 | radiation | 10 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 738 | 112.25 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 740 | 112.26 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 20 |
| 817 | 112.58 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 830 | 112.61 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 834 | 112.62 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 835 | 112.62 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 919 | 112.86 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 923 | 112.86 | radiation | 1 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 934 | 112.88 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 954 | 112.90 | humidity | 90 | 10 | < th | dose dependent | rect. | 20 | 23 |