Os02g0224300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMW glutenin family protein.
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Os02g0224300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMW glutenin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.73 | 0.314 | 13.4 | 0.749 | 0.613 | 0.528 | 0.709 | 0.846 | 0.534 | 21.2 | 20.91 | 1367 | -- | -- |
| 46.15 | 0.316 | 13.4 | 0.563 | 0.614 | 0.449 | 0.746 | -- | 0.5 | 21.1 | 21 | 1291 | -- | -- |
| 46.38 | 0.317 | 13.4 | 0.743 | 0.597 | 0.517 | -- | 0.871 | 0.539 | 21 | 20.9 | 1220 | -- | -- |
| 48.02 | 0.323 | 13.4 | 0.529 | 0.608 | 0.477 | -- | -- | 0.501 | 21.1 | 20.5 | 1739 | -- | -- |
| 62.22 | 0.367 | 13.4 | 0.774 | -- | 0.586 | -- | 0.931 | 0.509 | -- | 21.37 | 783 | -- | -- |
| 51.03 | 0.335 | 13.4 | 0.753 | 0.62 | -- | 0.741 | -- | 0.606 | 21.3 | -- | -- | -- | -- |
| 52.99 | 0.341 | 13.4 | 0.726 | 0.619 | -- | -- | -- | 0.605 | 21.2 | -- | -- | -- | -- |
| 65.11 | 0.376 | 13.4 | 0.582 | -- | 0.556 | -- | -- | 0.499 | -- | 21.4 | 731 | -- | -- |
| 51.87 | 0.335 | 13.4 | -- | 0.632 | 0.694 | -- | -- | 0.356 | 21.3 | 20.09 | 8115 | -- | -- |
| 75.2 | 0.405 | 13.4 | 0.729 | -- | -- | -- | -- | 0.602 | -- | -- | -- | -- | -- |
| 66.9 | 0.383 | 13.4 | -- | 0.619 | -- | -- | -- | 0.524 | 21.3 | -- | -- | -- | -- |
| 71.6 | 0.394 | 13.4 | -- | -- | 0.699 | -- | -- | 0.381 | -- | 20.81 | 760 | -- | -- |
| 89.2 | 0.441 | 13.4 | -- | -- | -- | -- | -- | 0.522 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 17 | 43.64 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 46 | 44.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 57 | 44.26 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 19 |
| 66 | 44.45 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 69 | 44.46 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 15 |
| 71 | 44.46 | wind | 3 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 74 | 44.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 77 | 44.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 83 | 44.51 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 90 | 44.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 99 | 44.65 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 100 | 44.66 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 104 | 44.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 12 |
| 106 | 44.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 118 | 44.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 128 | 44.77 | wind | 5 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 145 | 44.84 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 149 | 44.85 | wind | 5 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 154 | 44.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 163 | 44.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 9 |
| 180 | 44.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 187 | 44.97 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 194 | 44.99 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 195 | 45.00 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 201 | 45.04 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 228 | 45.14 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 5 |
| 261 | 45.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 294 | 45.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 296 | 45.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 302 | 45.29 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 305 | 45.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 313 | 45.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 364 | 45.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 373 | 45.39 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 427 | 45.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 431 | 45.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 21 |
| 450 | 45.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 522 | 45.48 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 548 | 45.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 552 | 45.50 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 563 | 45.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 566 | 45.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 21 |
| 570 | 45.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 586 | 45.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 606 | 45.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 611 | 45.53 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 662 | 45.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 666 | 45.56 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 681 | 45.57 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 722 | 45.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 727 | 45.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 728 | 45.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 751 | 45.61 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 765 | 45.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 791 | 45.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 810 | 45.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 896 | 45.71 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 946 | 45.74 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 949 | 45.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 961 | 45.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |