Os02g0223300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0223300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.96 | 0.355 | 10.7 | 2 | 1.45 | -1.18 | -0.507 | 0.886 | 0.499 | 22.4 | 15.02 | 10 | -- | -- |
| 57.23 | 0.355 | 10.7 | 1.87 | 1.45 | -1.17 | -0.678 | -- | 0.463 | 22.4 | 15.02 | 10 | -- | -- |
| 57.54 | 0.356 | 10.7 | 2.08 | 1.45 | -1.22 | -- | 1.35 | 0.516 | 22.4 | 14.73 | 7 | -- | -- |
| 59.07 | 0.36 | 10.7 | 1.9 | 1.45 | -1.21 | -- | -- | 0.466 | 22.4 | 10.93 | 9 | -- | -- |
| 170.75 | 0.609 | 10.6 | 2.31 | -- | -2.24 | -- | 1.51 | 0.664 | -- | 3.292 | 2 | -- | -- |
| 71.12 | 0.395 | 10.8 | 1.64 | 1.65 | -- | -0.634 | -- | 0.296 | 23 | -- | -- | -- | -- |
| 72.82 | 0.4 | 10.8 | 1.66 | 1.65 | -- | -- | -- | 0.298 | 23 | -- | -- | -- | -- |
| 172.61 | 0.615 | 10.7 | 2.08 | -- | -1.92 | -- | -- | 0.603 | -- | 17.57 | 7 | -- | -- |
| 144.44 | 0.563 | 10.8 | -- | 1.6 | -0.299 | -- | -- | 0.143 | 22.9 | 24.1 | 8 | -- | -- |
| 243.01 | 0.728 | 10.7 | 1.7 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 145.85 | 0.565 | 10.8 | -- | 1.67 | -- | -- | -- | 0.113 | 23.1 | -- | -- | -- | -- |
| 279.81 | 0.782 | 10.7 | -- | -- | -1.31 | -- | -- | 0.302 | -- | 19.6 | 2 | -- | -- |
| 319.44 | 0.834 | 10.8 | -- | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 6 | 55.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 7 | 56.01 | temperature | 15.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 15 | 56.27 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 23 | 56.39 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 30 | 56.49 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 35 | 56.55 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 44 | 56.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 49 | 56.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 53 | 56.89 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 58 | 56.92 | temperature | 30.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 61 | 56.95 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 19 |
| 63 | 56.97 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 67 | 56.99 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 73 | 57.02 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 104 | 57.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 110 | 57.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 136 | 57.50 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 148 | 57.57 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 162 | 57.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 178 | 57.72 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 229 | 58.01 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 234 | 58.04 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 267 | 58.15 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 298 | 58.29 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 325 | 58.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 329 | 58.40 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 348 | 58.44 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 354 | 58.46 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 368 | 58.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 374 | 58.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 379 | 58.57 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 482 | 58.97 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 508 | 59.05 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 517 | 59.08 | radiation | 20.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 562 | 59.21 | humidity | 70.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 613 | 59.36 | radiation | 20.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 647 | 59.44 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 672 | 59.50 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 695 | 59.56 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 697 | 59.57 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 705 | 59.59 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 738 | 59.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 774 | 59.72 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 775 | 59.73 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 776 | 59.73 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 809 | 59.77 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 828 | 59.83 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 833 | 59.85 | radiation | 20.0 | 30 | > th | dose independent | sin | 2 | NA |
| 835 | 59.85 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 844 | 59.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 872 | 59.95 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 929 | 60.06 | radiation | 10.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 930 | 60.06 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 939 | 60.07 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 948 | 60.10 | radiation | 20.0 | 30 | > th | dose independent | no | NA | NA |
| 949 | 60.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 950 | 60.10 | radiation | 20.0 | 30 | > th | dose independent | rect. | 7 | 10 |