FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0222500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0342) R2 : 0.532
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.03 (0.0895) R2dC : 0.531 R2C : 0.531
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.076 (0.0721) R2dN8 : 0.00147 R2N8 : 0.000788
σ : 0.646
deviance : 190.56
__
_____
C
peak time of C : 17.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.88 0.621 5.32 0.209 2.05 -0.0777 -0.985 -4.07 -0.0372 17.3 80 1832 -- --
187.56 0.638 5.32 -0.118 2.1 -0.444 -0.431 -- -0.109 17.3 79.07 2812 -- --
176.45 0.619 5.32 0.183 2.06 -0.0622 -- -3.89 -0.0368 17.3 80.68 1571 -- --
187.26 0.637 5.33 -0.076 2.07 -0.462 -- -- -0.116 17.2 79 2572 -- --
343.51 0.868 5.3 -0.191 -- -0.733 -- -0.258 -0.132 -- 80.68 1571 -- --
190.12 0.646 5.33 -0.109 2.03 -- -0.23 -- -0.0869 17.4 -- -- -- --
190.25 0.646 5.33 -0.108 2.03 -- -- -- -0.088 17.4 -- -- -- --
248.39 0.734 5.31 -0.155 -- -1.52 -- -- -0.185 -- 79.65 384 -- --
187.48 0.638 5.33 -- 2.06 -0.449 -- -- -0.114 17.2 79.02 2586 -- --
405.32 0.941 5.3 -0.177 -- -- -- -- -0.138 -- -- -- -- --
190.56 0.646 5.33 -- 2.03 -- -- -- -0.076 17.4 -- -- -- --
249.03 0.735 5.31 -- -- -1.52 -- -- -0.167 -- 79.58 383 -- --
406.15 0.941 5.3 -- -- -- -- -- -0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.42 temperature 30 270 < th dose dependent rect. 17 3
8 169.88 temperature 30 10 < th dose dependent rect. 16 6
13 170.40 temperature 25 270 < th dose independent rect. 17 3
16 170.75 temperature 10 270 > th dose dependent rect. 9 16
29 171.70 radiation 1 270 < th dose dependent rect. 17 2
31 171.76 radiation 1 270 < th dose independent rect. 16 4
33 171.85 temperature 30 270 < th dose independent rect. 2 18
36 171.90 radiation 1 270 < th dose dependent rect. 16 4
41 172.21 atmosphere 1015 30 < th dose dependent rect. 22 21
58 172.72 temperature 30 90 < th dose independent rect. 4 18
74 173.11 radiation 20 270 < th dose dependent rect. 15 5
91 173.41 temperature 25 10 < th dose independent rect. 17 5
93 173.43 humidity 80 270 > th dose independent rect. 3 17
125 173.78 temperature 30 270 < th dose dependent rect. 2 19
127 173.80 temperature 30 90 < th dose dependent rect. 4 19
129 173.88 humidity 50 270 > th dose dependent rect. 16 4
137 173.94 radiation 20 270 < th dose independent rect. 15 6
148 174.17 humidity 60 270 > th dose independent rect. 16 4
155 174.23 radiation 20 270 < th dose dependent rect. 15 18
190 174.44 radiation 1 4320 < th dose dependent rect. 20 3
192 174.46 temperature 30 90 < th dose dependent rect. 11 11
203 174.57 temperature 10 270 > th dose dependent rect. 7 9
210 174.65 temperature 30 270 < th dose independent rect. 16 15
212 174.66 temperature 10 30 > th dose dependent rect. 22 21
221 174.73 humidity 50 90 > th dose dependent rect. 16 6
231 174.80 atmosphere 1005 270 > th dose dependent rect. 24 6
232 174.80 temperature 30 10 < th dose dependent rect. 12 10
241 174.91 temperature 30 90 < th dose dependent rect. 9 13
291 175.20 atmosphere 1005 270 > th dose dependent rect. 2 2
298 175.22 humidity 60 10 > th dose dependent rect. 17 5
304 175.23 temperature 30 10 < th dose dependent rect. 10 12
316 175.28 temperature 20 90 > th dose dependent rect. 8 11
334 175.37 humidity 80 270 > th dose independent rect. 3 8
353 175.43 humidity 60 270 > th dose dependent rect. 2 19
393 175.63 temperature 15 10 > th dose dependent rect. 12 14
423 175.80 humidity 60 270 > th dose dependent rect. 3 17
447 175.84 temperature 25 270 > th dose dependent rect. 18 22
465 175.88 humidity 70 10 > th dose independent rect. 19 3
467 175.89 humidity 80 1440 > th dose independent rect. 17 21
499 175.95 humidity 80 1440 < th dose independent rect. 17 21
517 175.97 temperature 30 720 < th dose dependent rect. 9 2
522 175.98 temperature 10 1440 > th dose independent rect. 20 3
525 175.98 temperature 30 1440 < th dose independent rect. 20 3
529 175.98 humidity 50 1440 > th dose independent rect. 20 3
535 175.98 atmosphere 995 1440 > th dose independent rect. 20 3
536 175.98 radiation 1 1440 < th dose independent rect. 20 3
557 175.98 temperature 10 1440 > th dose independent rect. 23 21
597 176.07 radiation 20 270 < th dose dependent rect. 15 15
628 176.15 temperature 25 10 < th dose independent rect. 10 13
660 176.24 wind 9 30 < th dose independent rect. 22 21
665 176.25 temperature 20 10 > th dose dependent sin 19 NA
677 176.28 atmosphere 1000 30 > th dose independent rect. 19 3
695 176.30 temperature 25 90 > th dose dependent rect. 21 22
707 176.33 temperature 20 90 > th dose dependent sin 20 NA
718 176.35 wind 9 270 < th dose independent rect. 20 21
729 176.38 wind 1 270 > th dose dependent rect. 17 3
744 176.44 atmosphere 1000 270 > th dose independent rect. 17 3
747 176.45 temperature 30 720 < th dose independent rect. 9 5
758 176.48 wind 1 1440 > th dose independent rect. 23 1
759 176.49 temperature 25 90 < th dose independent rect. 11 11
768 176.51 atmosphere 1015 30 < th dose independent rect. 22 21
776 176.53 temperature 10 10 > th dose dependent sin 18 NA
777 176.53 atmosphere 1015 270 < th dose dependent rect. 20 20
783 176.54 humidity 50 30 > th dose dependent rect. 19 3
805 176.57 humidity 80 1440 > th dose independent rect. 12 23
811 176.58 humidity 80 1440 > th dose independent rect. 7 23
825 176.60 humidity 50 270 > th dose independent rect. 16 14
845 176.63 atmosphere 995 30 > th dose dependent rect. 19 3
853 176.64 atmosphere 1005 10 < th dose independent rect. 23 18
875 176.68 humidity 80 1440 > th dose independent no NA NA
878 176.68 humidity 80 1440 > th dose independent rect. 1 23
885 176.69 wind 1 30 > th dose independent rect. 19 3
910 176.72 humidity 80 1440 < th dose independent rect. 12 23
915 176.73 humidity 80 1440 > th dose independent rect. 4 23
917 176.73 atmosphere 1005 10 > th dose dependent rect. 2 6
920 176.74 wind 7 270 < th dose independent rect. 11 15
921 176.74 radiation 20 270 < th dose independent rect. 15 15
933 176.75 wind 7 270 < th dose independent rect. 21 19
935 176.75 humidity 80 1440 > th dose independent rect. 23 23
941 176.76 wind 9 30 < th dose independent rect. 19 3
942 176.76 temperature 10 30 > th dose independent rect. 19 3
945 176.76 humidity 50 30 > th dose independent rect. 19 3
948 176.76 atmosphere 1010 30 < th dose independent rect. 19 3
950 176.76 radiation 1 30 < th dose independent rect. 19 3
955 176.76 temperature 10 30 > th dose independent rect. 22 21
957 176.76 radiation 1 30 < th dose dependent rect. 19 3
992 176.80 temperature 25 90 > th dose dependent rect. 3 23
996 176.81 temperature 25 90 > th dose dependent no NA NA