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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0221300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Eukaryotic initiation factor 4A-6 (eIF4A-6) (eIF-4A-6) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0479) R2 : 0.283
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.668 (0.124) R2dC : 0.0461 R2C : 0.0389
β3 : 1.1 (0.137) R2dE : 0.111 R2E : 0.151
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.625 (0.105) R2dN8 : 0.0802 R2N8 : 0.118
σ : 0.887
deviance : 363.09
__
_____
C
peak time of C : 5.55
E
wheather : temperature
threshold : 25.4
memory length : 7262
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
361.05 0.893 4.27 -0.584 0.675 1.21 -0.0231 -1.65 0.455 5.54 25.5 7255 -- --
364.59 0.889 4.21 -0.124 0.696 1.13 0.0708 -- 0.522 5.68 24.6 7946 -- --
361.04 0.885 4.27 -0.586 0.676 1.21 -- -1.65 0.455 5.54 25.5 7259 -- --
363.02 0.887 4.19 -0.053 0.675 1.1 -- -- 0.618 5.49 25.4 7267 -- --
384.38 0.913 4.27 -0.539 -- 1.24 -- -1.53 0.475 -- 25.6 7182 -- --
407.77 0.947 4.12 0.462 0.712 -- 0.0302 -- 0.942 5.25 -- -- -- --
407.78 0.946 4.12 0.462 0.712 -- -- -- 0.942 5.25 -- -- -- --
385.83 0.915 4.2 -0.0447 -- 1.13 -- -- 0.647 -- 25.3 7165 -- --
363.09 0.887 4.19 -- 0.668 1.1 -- -- 0.625 5.55 25.4 7262 -- --
434.27 0.974 4.13 0.487 -- -- -- -- 0.959 -- -- -- -- --
413.4 0.951 4.13 -- 0.72 -- -- -- 0.89 5.23 -- -- -- --
385.85 0.915 4.2 -- -- 1.13 -- -- 0.636 -- 25.4 7165 -- --
440.52 0.98 4.14 -- -- -- -- -- 0.905 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 360.28 temperature 25 1440 > th dose independent rect. 5 2
2 360.30 temperature 25 4320 > th dose independent rect. 17 1
3 361.10 temperature 25 1440 < th dose independent rect. 5 2
4 361.11 radiation 1 14400 < th dose dependent rect. 2 3
5 361.34 temperature 25 4320 < th dose independent rect. 17 1
8 362.31 radiation 1 1440 < th dose dependent rect. 22 7
12 362.78 temperature 25 1440 > th dose dependent rect. 17 14
16 362.94 radiation 40 43200 < th dose independent rect. 10 1
18 363.05 temperature 25 4320 < th dose independent rect. 4 5
35 363.59 temperature 25 1440 > th dose dependent rect. 16 7
60 364.00 temperature 25 1440 > th dose dependent rect. 3 4
71 364.16 temperature 25 1440 > th dose dependent sin 13 NA
73 364.21 temperature 25 1440 > th dose dependent rect. 17 1
77 364.29 temperature 25 1440 < th dose independent rect. 21 1
83 364.45 radiation 40 43200 > th dose dependent rect. 10 1
89 364.50 wind 5 43200 > th dose dependent rect. 11 5
106 364.71 temperature 25 1440 > th dose independent rect. 21 1
110 364.74 radiation 40 43200 < th dose independent rect. 15 20
126 364.93 humidity 90 43200 > th dose dependent rect. 22 1
129 364.95 radiation 40 43200 < th dose independent rect. 5 6
131 364.95 radiation 40 43200 < th dose independent rect. 18 17
134 364.96 radiation 40 43200 < th dose independent rect. 7 4
174 365.34 humidity 90 43200 > th dose dependent rect. 21 3
179 365.44 temperature 25 1440 > th dose independent rect. 17 6
227 365.80 wind 7 43200 < th dose independent rect. 10 6
229 365.81 wind 7 43200 > th dose independent rect. 9 7
230 365.82 wind 3 43200 > th dose independent rect. 9 1
235 365.88 radiation 40 43200 > th dose independent rect. 10 1
254 366.05 radiation 40 43200 < th dose independent sin 10 NA
263 366.08 temperature 25 1440 < th dose independent rect. 17 6
270 366.12 temperature 25 1440 > th dose independent rect. 16 16
272 366.12 radiation 40 43200 > th dose dependent rect. 7 4
294 366.19 temperature 25 14400 > th dose independent rect. 11 1
301 366.26 radiation 20 43200 < th dose independent rect. 16 17
315 366.37 wind 7 43200 > th dose independent rect. 5 10
324 366.41 wind 3 43200 < th dose independent rect. 9 1
329 366.43 wind 7 43200 < th dose independent rect. 5 10
343 366.50 temperature 25 14400 < th dose independent rect. 11 1
345 366.50 radiation 1 1440 < th dose dependent rect. 2 3
388 366.66 radiation 20 43200 < th dose independent rect. 6 3
397 366.69 radiation 20 43200 < th dose independent rect. 1 8
398 366.69 radiation 20 43200 < th dose independent rect. 20 13
431 366.76 humidity 90 43200 > th dose independent rect. 21 2
475 366.91 temperature 25 1440 < th dose independent rect. 15 18
512 367.06 temperature 20 14400 > th dose independent rect. 24 1
519 367.10 wind 7 43200 > th dose independent sin 1 NA
524 367.11 wind 7 43200 < th dose independent sin 1 NA
544 367.19 temperature 20 14400 > th dose independent rect. 20 6
548 367.21 temperature 20 14400 > th dose independent rect. 21 4
558 367.24 temperature 20 14400 < th dose independent rect. 24 1
569 367.27 temperature 20 14400 < th dose independent rect. 21 2
570 367.28 temperature 20 14400 < th dose independent rect. 21 5
574 367.30 temperature 20 14400 > th dose independent rect. 21 2
603 367.37 radiation 40 43200 > th dose dependent sin 10 NA
698 367.56 wind 5 43200 > th dose dependent rect. 5 12
730 367.61 temperature 20 14400 > th dose independent rect. 24 5
731 367.61 temperature 20 14400 < th dose independent rect. 24 5
736 367.61 temperature 20 14400 > th dose dependent rect. 21 2
884 367.76 temperature 20 270 > th dose dependent rect. 3 3
922 367.82 wind 5 43200 > th dose dependent sin 23 NA