FiT-DB / Search/ Help/ Sample detail

Os02g0220400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GATA transcription factor 16.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0331) R2 : 0.407
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.38 (0.0859) R2dC : 0.339 R2C : 0.309
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.531 (0.0696) R2dN8 : 0.098 R2N8 : 0.0677
σ : 0.624
deviance : 177.72
__
_____
C
peak time of C : 7.16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.57 0.567 10.4 -0.658 1.48 -1.06 0.218 0.626 -0.642 3.85 10.36 10 -- --
147.24 0.565 10.4 -0.681 1.51 -1.1 0.705 -- -0.639 3.73 10.45 10 -- --
145.67 0.562 10.4 -0.659 1.48 -1.05 -- 0.703 -0.643 3.87 10.33 10 -- --
148.61 0.568 10.4 -0.678 1.47 -1.03 -- -- -0.644 3.96 10.36 10 -- --
234.25 0.717 10.4 -0.637 -- -0.535 -- 0.737 -0.591 -- 8.029 6 -- --
164.21 0.601 10.3 -0.676 1.39 -- -0.612 -- -0.609 7.18 -- -- -- --
165.18 0.602 10.3 -0.69 1.39 -- -- -- -0.608 7.13 -- -- -- --
237.72 0.721 10.4 -0.646 -- -0.54 -- -- -0.591 -- 8.458 6 -- --
160.4 0.59 10.4 -- 1.47 -1.07 -- -- -0.566 3.84 10 8 -- --
267.09 0.764 10.4 -0.663 -- -- -- -- -0.584 -- -- -- -- --
177.72 0.624 10.3 -- 1.38 -- -- -- -0.531 7.16 -- -- -- --
248.7 0.737 10.4 -- -- -0.546 -- -- -0.52 -- 8.64 3 -- --
278.69 0.779 10.4 -- -- -- -- -- -0.51 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.37 humidity 70.0 270 > th dose dependent rect. 22 6
3 136.90 radiation 10.0 30 < th dose dependent rect. 1 17
6 137.22 radiation 10.0 10 < th dose dependent rect. 1 14
12 138.38 radiation 10.0 10 < th dose dependent sin 4 NA
13 138.41 temperature 20.0 270 > th dose independent rect. 23 5
17 138.58 atmosphere 1000.0 270 > th dose independent rect. 23 5
18 138.77 humidity 80.0 270 > th dose independent rect. 23 5
20 138.89 temperature 20.0 10 > th dose independent rect. 1 4
25 139.16 wind 7.0 270 < th dose independent rect. 18 15
34 139.56 precipitation 0.1 270 < th dose independent rect. 4 19
35 139.56 precipitation 0.1 270 < th dose dependent rect. 4 19
36 139.65 precipitation 0.1 270 < th dose independent rect. 18 15
37 139.65 precipitation 0.1 270 < th dose dependent rect. 18 15
39 139.67 wind 9.0 270 < th dose independent rect. 4 19
40 139.81 temperature 20.0 270 > th dose independent rect. 1 1
48 140.00 atmosphere 1015.0 90 < th dose dependent rect. 1 4
51 140.10 radiation 1.0 10 < th dose independent rect. 1 17
54 140.18 temperature 20.0 270 > th dose independent rect. 9 9
55 140.20 humidity 80.0 10 > th dose dependent rect. 1 4
59 140.29 temperature 10.0 270 > th dose independent rect. 23 5
60 140.29 temperature 30.0 270 < th dose independent rect. 23 5
61 140.29 humidity 50.0 270 > th dose independent rect. 23 5
65 140.29 radiation 1.0 270 < th dose independent rect. 23 5
70 140.29 temperature 10.0 270 > th dose independent rect. 4 19
71 140.29 radiation 1.0 270 < th dose dependent rect. 23 5
78 140.33 wind 9.0 270 < th dose independent rect. 23 5
86 140.63 temperature 20.0 30 > th dose independent rect. 12 17
88 140.65 radiation 1.0 10 > th dose independent sin 2 NA
96 140.76 precipitation 0.1 270 < th dose independent rect. 23 5
97 140.76 precipitation 0.1 270 < th dose dependent rect. 23 5
111 140.96 atmosphere 1015.0 270 < th dose dependent rect. 23 5
115 141.05 atmosphere 1015.0 270 < th dose independent rect. 23 5
120 141.09 atmosphere 1015.0 270 < th dose independent rect. 9 9
121 141.09 temperature 10.0 270 > th dose independent rect. 18 15
122 141.09 humidity 50.0 270 > th dose independent rect. 18 15
126 141.12 radiation 1.0 90 > th dose independent sin 5 NA
130 141.17 radiation 40.0 270 < th dose independent rect. 18 15
133 141.18 temperature 10.0 270 > th dose dependent rect. 23 5
158 141.29 humidity 70.0 270 > th dose dependent rect. 1 1
166 141.42 precipitation 0.1 270 < th dose independent rect. 2 23
167 141.42 precipitation 0.1 270 < th dose dependent rect. 2 23
169 141.44 temperature 20.0 270 > th dose independent rect. 10 18
176 141.50 atmosphere 995.0 270 > th dose independent rect. 18 15
181 141.59 atmosphere 1015.0 270 < th dose independent rect. 4 19
189 141.76 temperature 25.0 90 < th dose independent rect. 1 4
192 141.77 atmosphere 1015.0 10 < th dose dependent rect. 1 4
195 141.82 atmosphere 995.0 270 > th dose independent rect. 4 19
196 141.83 humidity 80.0 90 > th dose independent rect. 1 4
197 141.84 humidity 50.0 270 > th dose dependent rect. 4 7
211 142.00 atmosphere 1015.0 270 < th dose dependent rect. 1 1
219 142.05 atmosphere 1000.0 90 > th dose independent rect. 1 4
223 142.06 humidity 70.0 270 > th dose independent rect. 4 6
230 142.12 radiation 1.0 90 < th dose independent rect. 1 14
237 142.17 atmosphere 1000.0 270 > th dose independent rect. 1 1
243 142.22 wind 1.0 90 > th dose independent rect. 5 20
249 142.27 humidity 80.0 270 > th dose independent rect. 1 1
258 142.34 radiation 10.0 10 < th dose dependent rect. 1 9
266 142.42 precipitation 0.1 270 < th dose independent rect. 9 9
267 142.42 precipitation 0.1 270 < th dose dependent rect. 9 9
269 142.43 temperature 20.0 90 > th dose independent rect. 1 17
270 142.43 humidity 80.0 10 > th dose dependent rect. 1 7
271 142.44 humidity 90.0 270 < th dose independent rect. 9 9
282 142.50 humidity 50.0 270 > th dose independent rect. 13 15
327 142.66 radiation 1.0 10 < th dose independent rect. 1 15
334 142.70 wind 9.0 270 < th dose independent rect. 9 9
335 142.70 wind 7.0 270 < th dose independent rect. 15 9
339 142.71 wind 9.0 270 < th dose dependent rect. 15 8
341 142.72 wind 9.0 4320 < th dose independent rect. 2 4
343 142.72 radiation 1.0 90 < th dose dependent rect. 1 4
366 142.81 radiation 1.0 10 < th dose independent sin 3 NA
371 142.82 radiation 1.0 90 < th dose independent rect. 1 4
374 142.84 precipitation 0.1 270 < th dose independent rect. 4 6
377 142.84 precipitation 0.1 270 < th dose dependent rect. 4 6
384 142.88 temperature 10.0 90 > th dose independent rect. 1 4
387 142.88 humidity 50.0 90 > th dose independent rect. 1 4
390 142.88 atmosphere 1000.0 10 > th dose independent rect. 1 4
392 142.88 atmosphere 1010.0 90 < th dose independent rect. 1 4
404 142.91 wind 9.0 90 < th dose independent rect. 1 4
408 142.94 radiation 1.0 10 < th dose independent rect. 1 13
412 142.99 temperature 10.0 270 > th dose independent rect. 4 6
413 142.99 atmosphere 995.0 270 > th dose independent rect. 4 6
414 142.99 atmosphere 1015.0 270 < th dose independent rect. 4 6
415 142.99 temperature 10.0 270 > th dose independent rect. 10 18
421 143.01 wind 9.0 270 < th dose dependent rect. 23 5
435 143.06 radiation 20.0 10 < th dose dependent rect. 10 20
438 143.08 wind 9.0 270 < th dose independent rect. 4 6
441 143.09 radiation 1.0 90 < th dose independent rect. 1 7
466 143.13 temperature 10.0 10 > th dose dependent rect. 1 4
478 143.16 temperature 30.0 270 < th dose independent rect. 4 6
488 143.22 temperature 10.0 270 > th dose dependent rect. 1 1
504 143.28 radiation 1.0 90 < th dose independent sin 5 NA
519 143.35 precipitation 0.1 270 < th dose independent rect. 1 1
521 143.35 precipitation 0.1 270 < th dose dependent rect. 1 1
532 143.41 temperature 10.0 270 > th dose independent rect. 1 1
534 143.41 temperature 30.0 270 < th dose independent rect. 1 1
535 143.41 humidity 50.0 270 > th dose independent rect. 1 1
539 143.41 atmosphere 1010.0 270 < th dose independent rect. 1 1
541 143.41 radiation 1.0 270 < th dose independent rect. 1 1
547 143.41 temperature 10.0 270 > th dose independent rect. 2 23
548 143.41 radiation 1.0 270 < th dose dependent rect. 1 1
569 143.45 temperature 10.0 90 > th dose dependent rect. 1 4
571 143.46 radiation 1.0 10 < th dose independent rect. 1 11
576 143.49 wind 9.0 270 < th dose independent rect. 2 23
580 143.50 wind 9.0 270 < th dose independent rect. 1 1
581 143.50 wind 1.0 270 > th dose independent rect. 9 9
582 143.50 humidity 50.0 270 > th dose independent rect. 11 17
594 143.57 precipitation 0.1 10 < th dose independent rect. 5 20
595 143.57 precipitation 0.1 10 < th dose dependent rect. 5 20
607 143.66 atmosphere 995.0 270 > th dose independent rect. 9 9
609 143.67 wind 7.0 90 < th dose independent rect. 18 7
639 143.85 temperature 20.0 10 > th dose independent rect. 23 6
659 143.93 precipitation 0.1 90 < th dose independent rect. 18 7
662 143.93 precipitation 0.1 90 < th dose dependent rect. 18 7
671 143.98 radiation 10.0 10 < th dose independent rect. 1 5
698 144.01 wind 9.0 10 < th dose independent rect. 1 4
699 144.01 temperature 10.0 10 > th dose independent rect. 1 4
701 144.01 temperature 30.0 10 < th dose independent rect. 1 4
702 144.01 humidity 50.0 10 > th dose independent rect. 1 4
706 144.01 atmosphere 1010.0 10 < th dose independent rect. 1 4
717 144.01 atmosphere 1000.0 10 > th dose independent rect. 12 17
719 144.01 temperature 10.0 10 > th dose independent rect. 5 20
726 144.03 wind 9.0 10 < th dose independent rect. 5 20
731 144.04 atmosphere 995.0 270 > th dose independent rect. 10 18
732 144.04 atmosphere 995.0 10 > th dose independent rect. 5 20
737 144.06 temperature 10.0 90 > th dose independent rect. 18 7
738 144.06 humidity 50.0 90 > th dose independent rect. 18 7
739 144.06 radiation 20.0 90 < th dose independent rect. 18 7
744 144.06 atmosphere 1015.0 90 < th dose independent rect. 1 17
768 144.10 atmosphere 995.0 90 > th dose independent rect. 18 7
769 144.10 humidity 50.0 270 > th dose independent rect. 9 9
771 144.10 radiation 40.0 90 < th dose dependent rect. 18 7
782 144.13 wind 1.0 270 < th dose dependent rect. 24 1
795 144.17 temperature 10.0 1440 > th dose independent rect. 2 4
798 144.17 temperature 30.0 1440 < th dose independent rect. 2 4
802 144.17 humidity 50.0 1440 > th dose independent rect. 2 4
811 144.17 atmosphere 995.0 1440 > th dose independent rect. 2 4
812 144.17 radiation 20.0 1440 < th dose independent rect. 2 4
823 144.17 temperature 30.0 270 < th dose independent rect. 18 15
824 144.17 temperature 10.0 1440 > th dose independent rect. 6 20
830 144.20 temperature 20.0 270 > th dose independent rect. 23 19
857 144.33 radiation 1.0 10 < th dose independent rect. 1 7
926 144.51 wind 9.0 270 < th dose independent rect. 10 18
940 144.57 precipitation 0.1 270 < th dose independent rect. 16 7
942 144.57 precipitation 0.1 270 < th dose dependent rect. 16 7
966 144.65 wind 1.0 270 < th dose independent rect. 24 1
972 144.66 precipitation 0.1 270 < th dose independent rect. 10 18
975 144.66 precipitation 0.1 270 < th dose dependent rect. 10 18
984 144.68 radiation 20.0 1440 < th dose independent rect. 11 2
986 144.68 precipitation 0.1 270 < th dose independent rect. 15 9
989 144.68 precipitation 0.1 270 < th dose dependent rect. 15 9
996 144.70 precipitation 0.1 10 < th dose independent rect. 1 4
997 144.70 precipitation 0.1 10 < th dose dependent rect. 1 4