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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0219200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid beta- galactosidase) (Exo-(1-->4)-beta-D-galactanase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.039) R2 : 0.0184
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.24 (0.0821) R2dN8 : 0.0237 R2N8 : 0.0184
σ : 0.735
deviance : 247.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.45 0.696 3.39 -0.396 0.361 0.517 -0.637 -0.933 -0.22 11.1 1015 4082 -- --
219.19 0.69 3.4 -0.462 0.359 1.08 -0.575 -- -0.242 11.3 1016 3990 -- --
220.51 0.692 3.38 -0.381 0.359 0.608 -- -1.17 -0.201 11.5 1016 3962 -- --
220.63 0.692 3.4 -0.463 0.362 1.11 -- -- -0.242 11.3 1016 3998 -- --
228.25 0.704 3.4 -0.437 -- 0.852 -- -0.968 -0.233 -- 1016 3967 -- --
227.46 0.707 3.41 -0.566 0.37 -- -0.685 -- -0.3 11.5 -- -- -- --
229.48 0.709 3.41 -0.593 0.373 -- -- -- -0.303 11.6 -- -- -- --
228.85 0.705 3.4 -0.478 -- 1.15 -- -- -0.238 -- 1016 3998 -- --
224.2 0.697 3.39 -- 0.352 1.05 -- -- -0.166 11.3 1016 34295 -- --
238.23 0.721 3.42 -0.603 -- -- -- -- -0.307 -- -- -- -- --
238.76 0.723 3.4 -- 0.38 -- -- -- -0.237 11.6 -- -- -- --
232.14 0.71 3.39 -- -- 1.14 -- -- -0.144 -- 1016 34326 -- --
247.83 0.735 3.4 -- -- -- -- -- -0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.76 radiation 1.0 90 < th dose dependent rect. 7 7
5 211.49 radiation 1.0 90 < th dose independent rect. 7 7
8 212.07 radiation 1.0 10 < th dose independent rect. 6 8
25 213.88 radiation 1.0 90 < th dose independent rect. 5 12
26 214.01 radiation 1.0 720 < th dose independent rect. 10 3
27 214.01 radiation 1.0 720 < th dose dependent rect. 10 3
41 214.92 radiation 1.0 90 < th dose dependent rect. 5 12
45 215.21 humidity 80.0 90 > th dose dependent rect. 12 1
46 215.32 humidity 80.0 720 > th dose dependent rect. 11 3
47 215.46 humidity 80.0 90 > th dose independent rect. 12 1
54 215.74 radiation 1.0 720 < th dose independent rect. 12 2
55 215.74 radiation 1.0 720 < th dose dependent rect. 12 2
57 215.80 humidity 80.0 720 > th dose dependent rect. 12 1
66 216.00 radiation 1.0 90 < th dose independent rect. 10 4
67 216.00 radiation 1.0 90 < th dose dependent rect. 10 4
69 216.05 humidity 80.0 720 > th dose independent rect. 12 1
80 216.16 temperature 10.0 30 > th dose dependent rect. 6 23
92 216.45 radiation 1.0 10 < th dose independent rect. 13 1
102 216.45 radiation 1.0 10 < th dose dependent rect. 13 1
141 217.05 atmosphere 1000.0 10 < th dose dependent rect. 10 1
143 217.06 temperature 15.0 90 > th dose independent rect. 5 23
146 217.10 atmosphere 1000.0 90 < th dose dependent rect. 8 1
161 217.25 radiation 1.0 1440 > th dose independent rect. 10 2
163 217.29 radiation 1.0 270 < th dose dependent rect. 19 20
168 217.42 humidity 80.0 10 > th dose independent rect. 14 1
176 217.46 temperature 30.0 90 < th dose independent rect. 9 23
179 217.49 atmosphere 1000.0 1440 < th dose dependent rect. 10 1
180 217.49 temperature 20.0 270 > th dose dependent rect. 6 2
185 217.57 temperature 15.0 270 > th dose independent rect. 11 23
187 217.62 temperature 30.0 90 < th dose dependent rect. 11 21
188 217.64 temperature 10.0 90 > th dose dependent rect. 13 23
192 217.65 temperature 25.0 90 < th dose dependent rect. 2 15
212 217.71 precipitation 0.1 1440 < th dose independent rect. 9 5
213 217.71 precipitation 0.1 1440 < th dose dependent rect. 9 5
216 217.75 atmosphere 995.0 30 > th dose dependent rect. 11 21
231 217.87 temperature 15.0 720 > th dose independent rect. 8 10
241 218.00 temperature 25.0 10 < th dose dependent rect. 3 13
242 218.01 precipitation 0.1 1440 < th dose independent rect. 10 2
244 218.01 temperature 15.0 720 > th dose independent rect. 6 14
245 218.01 precipitation 0.1 1440 < th dose dependent rect. 10 2
254 218.04 radiation 1.0 1440 > th dose independent rect. 9 5
261 218.07 temperature 30.0 90 < th dose dependent rect. 21 20
268 218.12 temperature 20.0 270 > th dose dependent rect. 5 4
276 218.15 temperature 15.0 90 > th dose independent rect. 13 23
290 218.19 radiation 1.0 720 > th dose independent rect. 7 8
310 218.27 temperature 15.0 720 > th dose independent rect. 6 20
311 218.28 humidity 90.0 1440 < th dose independent rect. 11 2
323 218.33 temperature 15.0 1440 > th dose independent rect. 11 2
324 218.33 temperature 15.0 270 > th dose independent rect. 3 23
336 218.40 temperature 20.0 90 < th dose independent rect. 2 2
340 218.41 temperature 10.0 30 > th dose dependent sin 5 NA
341 218.41 radiation 1.0 720 < th dose dependent rect. 2 21
345 218.43 atmosphere 1000.0 10 < th dose independent rect. 1 10
350 218.44 radiation 1.0 720 < th dose dependent rect. 2 14
353 218.45 temperature 15.0 30 > th dose dependent rect. 6 20
354 218.45 temperature 15.0 10 > th dose dependent rect. 14 22
363 218.47 humidity 50.0 90 > th dose dependent rect. 11 19
367 218.48 radiation 1.0 270 < th dose independent rect. 19 20
369 218.48 atmosphere 995.0 270 > th dose dependent rect. 9 21
374 218.50 temperature 15.0 90 > th dose independent rect. 14 21
384 218.54 radiation 1.0 1440 < th dose dependent rect. 4 1
408 218.58 radiation 1.0 10 < th dose dependent rect. 5 3
412 218.58 temperature 10.0 270 > th dose dependent rect. 22 12
413 218.59 atmosphere 1000.0 10 < th dose independent rect. 4 7
423 218.62 temperature 30.0 90 < th dose dependent rect. 21 18
450 218.71 wind 7.0 90 > th dose dependent rect. 1 8
451 218.71 temperature 10.0 90 > th dose dependent rect. 6 14
456 218.72 atmosphere 1005.0 1440 < th dose dependent rect. 4 1
457 218.72 temperature 25.0 90 < th dose dependent rect. 2 21
463 218.74 temperature 30.0 10 < th dose dependent sin 5 NA
471 218.75 temperature 10.0 30 > th dose dependent rect. 3 23
472 218.76 atmosphere 1015.0 1440 < th dose independent rect. 24 4
476 218.76 temperature 25.0 90 < th dose dependent sin 5 NA
485 218.79 precipitation 0.1 1440 > th dose independent rect. 9 5
488 218.80 wind 7.0 90 > th dose independent rect. 1 8
491 218.80 atmosphere 995.0 1440 > th dose dependent rect. 6 1
507 218.83 radiation 40.0 90 < th dose dependent rect. 11 3
511 218.84 atmosphere 1005.0 1440 < th dose dependent rect. 4 3
513 218.85 temperature 25.0 10 < th dose dependent rect. 3 9
540 218.89 atmosphere 1005.0 1440 < th dose dependent rect. 6 1
541 218.89 humidity 60.0 10 > th dose dependent rect. 12 2
545 218.90 humidity 90.0 90 > th dose dependent rect. 5 19
561 218.92 temperature 25.0 720 < th dose dependent rect. 11 21
562 218.92 temperature 10.0 270 > th dose dependent rect. 3 23
580 218.96 atmosphere 1015.0 1440 < th dose dependent rect. 6 1
594 218.98 temperature 10.0 1440 > th dose dependent rect. 11 2
600 218.99 radiation 1.0 1440 > th dose independent rect. 13 1
602 218.99 temperature 15.0 1440 > th dose independent rect. 4 19
614 219.01 atmosphere 1005.0 1440 < th dose dependent rect. 24 12
619 219.02 humidity 50.0 90 < th dose dependent rect. 14 3
626 219.04 humidity 50.0 90 < th dose independent rect. 14 3
629 219.04 wind 5.0 43200 < th dose dependent rect. 19 1
632 219.04 atmosphere 1005.0 1440 < th dose dependent rect. 1 7
636 219.05 temperature 15.0 1440 > th dose independent rect. 11 5
657 219.07 temperature 10.0 1440 > th dose dependent rect. 9 4
667 219.08 radiation 1.0 720 < th dose dependent sin 2 NA
675 219.09 temperature 15.0 10 > th dose independent rect. 15 13
680 219.10 atmosphere 1000.0 10 < th dose independent rect. 8 2
690 219.11 radiation 1.0 10 < th dose independent rect. 6 2
694 219.11 temperature 15.0 1440 > th dose independent rect. 6 17
708 219.13 atmosphere 1000.0 90 < th dose independent rect. 8 1
735 219.15 temperature 20.0 30 > th dose dependent rect. 3 9
740 219.15 atmosphere 1015.0 30 < th dose dependent rect. 6 22
768 219.17 radiation 40.0 90 > th dose dependent rect. 15 18
770 219.17 temperature 25.0 720 < th dose dependent rect. 2 22
771 219.18 atmosphere 1000.0 270 < th dose independent rect. 5 2
797 219.19 temperature 15.0 1440 > th dose independent rect. 9 1
808 219.20 temperature 10.0 720 > th dose dependent rect. 21 21
828 219.21 radiation 40.0 90 > th dose dependent rect. 8 1
864 219.23 radiation 1.0 720 < th dose independent rect. 2 21
865 219.23 temperature 15.0 10 > th dose independent rect. 6 23
875 219.23 temperature 20.0 10 < th dose dependent rect. 3 20
876 219.24 temperature 15.0 720 > th dose independent rect. 14 12
911 219.26 temperature 10.0 720 > th dose dependent rect. 22 4
946 219.29 radiation 1.0 720 < th dose dependent rect. 5 18
948 219.29 temperature 10.0 720 > th dose dependent rect. 14 20
954 219.30 precipitation 0.1 1440 > th dose dependent rect. 9 5
976 219.32 humidity 50.0 90 < th dose dependent sin 12 NA
980 219.32 temperature 30.0 1440 < th dose dependent rect. 8 5