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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0218600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.89 (0.042) R2 : 0.525
β1 : -1.24 (0.153) R2dD : 0.0691 R2D : 0.0468
β2 : 1.82 (0.0992) R2dC : 0.361 R2C : 0.322
β3 : 1.21 (0.101) R2dE : 0.151 R2E : 0.0997
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.144 (0.0908) R2dN8 : 0.00502 R2N8 : -0.00969
σ : 0.781
deviance : 280.89
__
_____
C
peak time of C : 23.8
E
wheather : atmosphere
threshold : 1006
memory length : 111
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.81
open length of G : 6.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
273.9 0.778 5.89 -1.09 1.83 1.15 1.04 1.33 -0.135 23.9 1006 95 3.09 6.01
277.84 0.776 5.9 -1.18 1.85 1.14 1 -- -0.146 23.9 1006 88 3.05 6.22
278.58 0.777 5.89 -1.13 1.83 1.16 -- 1.21 -0.138 23.9 1006 93 3.11 6.07
280.89 0.781 5.89 -1.24 1.82 1.21 -- -- -0.144 23.8 1006 111 2.81 6.27
472.32 1.02 5.87 -1.02 -- 1.04 -- 1.39 -0.154 -- 1005 42 2.33 6.89
322.99 0.843 5.84 -1.08 1.95 -- 1.3 -- 0.00832 1.59 -- -- -- --
329.77 0.85 5.85 -1.12 1.95 -- -- -- 0.0011 1.57 -- -- -- --
470.55 1.01 5.89 -1.21 -- 1.15 -- -- -0.246 -- 1006 25 2.36 6.8
320.67 0.834 5.9 -- 1.83 1.14 -- -- -0.084 23.8 1006 117 2.73 6.33
561.18 1.11 5.82 -1.04 -- -- -- -- 0.0436 -- -- -- -- --
362.69 0.891 5.82 -- 1.93 -- -- -- 0.126 1.55 -- -- -- --
500.14 1.04 5.79 -- -- 1.22 -- -- 0.0875 -- 1004 126 0.6 5.47
589.7 1.13 5.8 -- -- -- -- -- 0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 278.19 atmosphere 1005.0 90 > th dose independent rect. 3 6
2 279.89 atmosphere 1005.0 270 > th dose independent rect. 1 7
3 280.07 radiation 40.0 270 < th dose independent rect. 2 17
9 282.02 atmosphere 1005.0 270 > th dose independent rect. 14 17
21 283.50 radiation 40.0 90 < th dose dependent rect. 3 18
33 284.56 radiation 20.0 90 < th dose independent rect. 3 18
34 284.57 atmosphere 1005.0 30 > th dose independent rect. 15 18
41 284.98 wind 1.0 90 < th dose dependent rect. 4 1
43 285.06 wind 1.0 90 < th dose independent rect. 4 1
62 285.68 humidity 60.0 30 > th dose dependent rect. 21 7
75 285.94 temperature 10.0 270 > th dose dependent rect. 6 8
82 286.23 atmosphere 995.0 30 > th dose independent rect. 4 17
99 286.66 radiation 20.0 10 < th dose independent rect. 4 17
123 287.12 temperature 30.0 720 > th dose dependent rect. 18 1
150 287.41 atmosphere 995.0 270 > th dose independent rect. 2 17
152 287.45 atmosphere 995.0 10 > th dose dependent rect. 16 17
156 287.60 temperature 15.0 270 > th dose independent rect. 19 7
158 287.63 humidity 50.0 270 > th dose dependent rect. 19 7
184 288.09 radiation 40.0 270 < th dose independent rect. 1 9
188 288.18 wind 9.0 30 < th dose dependent rect. 20 8
198 288.49 temperature 10.0 90 > th dose dependent rect. 9 7
210 288.67 humidity 80.0 720 < th dose dependent rect. 18 14
211 288.68 temperature 15.0 30 > th dose independent rect. 21 7
213 288.76 atmosphere 995.0 90 > th dose dependent rect. 3 6
218 288.82 temperature 30.0 270 < th dose independent rect. 19 7
219 288.82 humidity 50.0 270 > th dose independent rect. 19 7
221 288.82 atmosphere 995.0 270 > th dose independent rect. 19 7
222 288.82 radiation 1.0 270 < th dose independent rect. 19 7
227 288.82 temperature 10.0 270 > th dose independent rect. 2 17
228 288.82 atmosphere 1015.0 270 < th dose independent rect. 2 17
230 288.82 radiation 1.0 270 < th dose dependent rect. 19 7
238 288.90 radiation 40.0 90 < th dose independent rect. 3 8
240 288.93 humidity 80.0 30 > th dose independent rect. 21 7
244 288.97 radiation 40.0 270 < th dose dependent rect. 1 10
246 288.98 wind 9.0 270 < th dose independent rect. 19 7
252 289.04 radiation 20.0 90 < th dose independent rect. 3 8
255 289.09 precipitation 0.1 270 < th dose independent rect. 2 17
256 289.09 precipitation 0.1 270 < th dose dependent rect. 2 17
257 289.10 wind 5.0 30 < th dose independent rect. 21 7
258 289.11 radiation 40.0 90 < th dose dependent rect. 3 8
263 289.19 temperature 15.0 270 > th dose independent rect. 9 16
268 289.21 temperature 30.0 30 < th dose independent rect. 21 7
269 289.21 humidity 50.0 30 > th dose independent rect. 21 7
272 289.21 atmosphere 995.0 30 > th dose independent rect. 21 7
273 289.21 radiation 1.0 30 < th dose independent rect. 21 7
279 289.21 temperature 10.0 30 > th dose independent rect. 4 17
281 289.21 atmosphere 1015.0 30 < th dose independent rect. 4 17
282 289.21 radiation 1.0 30 < th dose dependent rect. 21 7
287 289.22 radiation 40.0 90 < th dose dependent rect. 15 20
299 289.33 wind 9.0 30 < th dose independent rect. 21 7
301 289.35 precipitation 0.1 30 < th dose independent rect. 21 7
304 289.35 precipitation 0.1 30 < th dose dependent rect. 21 7
308 289.43 wind 9.0 270 < th dose independent rect. 6 9
325 289.61 precipitation 0.1 270 < th dose independent rect. 19 7
327 289.61 precipitation 0.1 270 < th dose dependent rect. 19 7
336 289.70 radiation 20.0 10 < th dose independent rect. 4 6
339 289.71 radiation 20.0 90 < th dose independent rect. 15 20
360 289.76 wind 9.0 270 < th dose independent rect. 9 16
391 289.89 precipitation 0.1 10 < th dose independent rect. 4 17
393 289.89 precipitation 0.1 10 < th dose dependent rect. 4 17
396 289.92 precipitation 0.1 270 < th dose independent rect. 6 9
398 289.92 precipitation 0.1 270 < th dose dependent rect. 6 9
401 289.96 radiation 40.0 270 < th dose independent rect. 11 9
405 290.00 wind 9.0 30 < th dose independent rect. 4 17
431 290.13 temperature 20.0 270 > th dose independent rect. 6 9
432 290.13 wind 9.0 270 < th dose independent rect. 2 17
470 290.52 wind 7.0 270 < th dose independent rect. 1 8
472 290.52 radiation 40.0 270 < th dose independent rect. 15 15
480 290.58 precipitation 0.1 270 < th dose independent rect. 1 8
482 290.58 precipitation 0.1 270 < th dose dependent rect. 1 8
487 290.61 atmosphere 1015.0 270 < th dose independent rect. 6 9
488 290.61 temperature 10.0 270 > th dose independent rect. 15 15
500 290.75 atmosphere 995.0 270 > th dose independent rect. 15 15
507 290.79 atmosphere 995.0 270 > th dose dependent rect. 14 5
525 290.82 wind 7.0 270 < th dose independent rect. 15 15
536 290.88 temperature 10.0 30 > th dose dependent rect. 21 7
548 291.00 temperature 10.0 270 > th dose independent rect. 1 8
550 291.00 humidity 50.0 270 > th dose independent rect. 1 8
551 291.00 atmosphere 995.0 270 > th dose independent rect. 1 8
552 291.00 atmosphere 1015.0 270 < th dose independent rect. 1 8
554 291.01 radiation 40.0 90 < th dose dependent rect. 2 23
575 291.25 temperature 10.0 270 > th dose dependent rect. 19 19
579 291.32 atmosphere 1005.0 270 > th dose independent rect. 1 18
584 291.33 humidity 50.0 1440 < th dose independent rect. 16 1
586 291.35 humidity 80.0 720 < th dose dependent rect. 18 9
593 291.38 humidity 80.0 720 < th dose dependent rect. 18 7
617 291.44 temperature 15.0 270 > th dose independent rect. 19 19
630 291.52 precipitation 0.1 270 < th dose independent rect. 15 15
632 291.52 precipitation 0.1 270 < th dose dependent rect. 15 15
654 291.57 humidity 50.0 1440 < th dose dependent rect. 16 1
655 291.57 radiation 40.0 90 < th dose dependent rect. 15 18
674 291.68 humidity 50.0 30 > th dose dependent rect. 4 6
681 291.74 wind 9.0 90 < th dose dependent rect. 3 6
692 291.80 wind 1.0 270 > th dose independent rect. 7 8
693 291.80 temperature 15.0 90 > th dose independent rect. 9 18
694 291.80 atmosphere 995.0 10 > th dose dependent rect. 4 17
696 291.81 temperature 30.0 270 < th dose independent rect. 1 8
700 291.82 humidity 70.0 720 < th dose dependent rect. 18 2
705 291.82 radiation 40.0 30 < th dose dependent rect. 4 6
731 291.93 temperature 20.0 270 > th dose independent rect. 7 18
752 292.03 precipitation 0.1 270 < th dose independent rect. 9 16
755 292.03 precipitation 0.1 270 < th dose dependent rect. 9 16
758 292.06 atmosphere 995.0 270 > th dose independent rect. 14 5
759 292.06 wind 9.0 90 < th dose independent rect. 9 18
767 292.11 temperature 10.0 270 > th dose dependent rect. 19 7
769 292.12 radiation 20.0 90 < th dose independent rect. 2 23
808 292.25 radiation 1.0 270 > th dose independent rect. 6 9
812 292.26 atmosphere 1000.0 10 > th dose dependent rect. 4 5
844 292.33 humidity 60.0 720 < th dose independent rect. 18 1
870 292.37 temperature 30.0 720 > th dose independent rect. 18 1
892 292.40 atmosphere 1000.0 270 > th dose dependent rect. 2 4
921 292.49 wind 5.0 90 < th dose independent rect. 3 6
923 292.49 humidity 50.0 10 > th dose dependent rect. 4 16
926 292.52 precipitation 0.1 90 < th dose independent rect. 3 6
929 292.52 precipitation 0.1 90 < th dose dependent rect. 3 6
935 292.57 radiation 40.0 270 < th dose independent rect. 14 5
937 292.58 temperature 15.0 270 > th dose independent rect. 21 16
950 292.63 radiation 40.0 270 < th dose independent rect. 13 7
969 292.72 temperature 10.0 90 > th dose dependent rect. 9 18
977 292.75 wind 9.0 270 < th dose dependent rect. 1 8
979 292.77 radiation 40.0 270 < th dose independent rect. 11 22
986 292.81 humidity 60.0 90 > th dose independent rect. 3 6
988 292.82 temperature 10.0 90 > th dose dependent rect. 3 6
990 292.84 humidity 70.0 10 > th dose independent rect. 4 6
994 292.87 atmosphere 995.0 270 > th dose independent rect. 6 9
999 292.89 temperature 10.0 90 > th dose independent rect. 3 6