Os02g0217600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2A.
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Os02g0217600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.45 | 0.191 | 11.9 | 0.613 | 0.481 | -0.529 | 0.432 | 0.0516 | 0.229 | 0.643 | 79 | 1383 | -- | -- |
| 16.45 | 0.189 | 11.9 | 0.609 | 0.481 | -0.526 | 0.433 | -- | 0.228 | 0.645 | 78.92 | 1382 | -- | -- |
| 17.23 | 0.193 | 11.9 | 0.604 | 0.481 | -0.523 | -- | 0.142 | 0.232 | 0.718 | 79 | 1382 | -- | -- |
| 17.22 | 0.193 | 11.9 | 0.592 | 0.481 | -0.514 | -- | -- | 0.225 | 0.821 | 79 | 1382 | -- | -- |
| 22.85 | 0.224 | 11.9 | 0.609 | -- | -0.314 | -- | -0.0735 | 0.197 | -- | 78.31 | 1631 | -- | -- |
| 19.8 | 0.209 | 12 | 0.583 | 0.464 | -- | 0.392 | -- | 0.204 | 0.46 | -- | -- | -- | -- |
| 20.44 | 0.212 | 12 | 0.568 | 0.464 | -- | -- | -- | 0.201 | 0.646 | -- | -- | -- | -- |
| 22.88 | 0.224 | 11.9 | 0.612 | -- | -0.315 | -- | -- | 0.198 | -- | 78.31 | 1631 | -- | -- |
| 26.18 | 0.238 | 12 | -- | 0.488 | -0.469 | -- | -- | 0.167 | 0.814 | 80 | 1392 | -- | -- |
| 33.9 | 0.272 | 11.9 | 0.584 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 28.93 | 0.252 | 12 | -- | 0.472 | -- | -- | -- | 0.138 | 0.703 | -- | -- | -- | -- |
| 32.73 | 0.267 | 12 | -- | -- | -0.302 | -- | -- | 0.131 | -- | 78.31 | 1631 | -- | -- |
| 42.9 | 0.306 | 12 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.91 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 15.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 4 | 15.08 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 12 | 15.22 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 18 | 15.35 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 77 | 15.68 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 126 | 15.83 | temperature | 15.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 144 | 15.87 | temperature | 15.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 168 | 15.92 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 173 | 15.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 180 | 15.93 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 196 | 15.97 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 222 | 16.02 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 238 | 16.04 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 243 | 16.04 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 281 | 16.10 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 5 |
| 391 | 16.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 10 |
| 403 | 16.24 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 413 | 16.25 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 425 | 16.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 428 | 16.27 | humidity | 80.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 430 | 16.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 444 | 16.28 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 465 | 16.30 | humidity | 80.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 498 | 16.33 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 533 | 16.35 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 589 | 16.38 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 615 | 16.40 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 617 | 16.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 668 | 16.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 690 | 16.43 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 696 | 16.44 | temperature | 10.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 729 | 16.45 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 758 | 16.47 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 14 | 14 |
| 769 | 16.47 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 777 | 16.47 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 836 | 16.50 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 859 | 16.51 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 862 | 16.51 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 869 | 16.51 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 894 | 16.53 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 898 | 16.53 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 913 | 16.53 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 914 | 16.53 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 915 | 16.54 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 966 | 16.55 | temperature | 30.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 972 | 16.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 979 | 16.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 17 | 3 |