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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0216700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.28 (0.0266) R2 : 0.361
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.834 (0.0663) R2dC : 0.244 R2C : 0.13
β3 : 0.637 (0.0684) R2dE : 0.143 R2E : 0.066
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.289 (0.0576) R2dN8 : 0.0498 R2N8 : 0.0804
σ : 0.494
deviance : 112.4
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_____
C
peak time of C : 1.4
E
wheather : temperature
threshold : 21.69
memory length : 103
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.74 0.49 4.25 0.406 0.835 0.631 0.811 0.825 0.366 1.31 21.7 97 -- --
111.47 0.492 4.27 0.17 0.839 0.626 0.324 -- 0.323 1.38 21.5 114 -- --
110.61 0.49 4.27 0.283 0.826 0.614 -- 0.448 0.34 1.37 21.72 103 -- --
111.7 0.492 4.28 0.167 0.821 0.609 -- -- 0.315 1.41 21.65 110 -- --
129.76 0.531 4.28 0.124 -- 0.797 -- 0.275 0.183 -- 24.78 1046 -- --
130.03 0.535 4.24 0.369 0.642 -- 0.208 -- 0.479 1.33 -- -- -- --
130.21 0.534 4.24 0.362 0.642 -- -- -- 0.478 1.35 -- -- -- --
129.36 0.53 4.3 0.108 -- 0.842 -- -- 0.18 -- 24.77 1057 -- --
112.4 0.494 4.28 -- 0.834 0.637 -- -- 0.289 1.4 21.69 103 -- --
155.63 0.583 4.23 0.387 -- -- -- -- 0.492 -- -- -- -- --
133.66 0.541 4.25 -- 0.649 -- -- -- 0.438 1.37 -- -- -- --
129.64 0.53 4.3 -- -- 0.866 -- -- 0.161 -- 24.7 1058 -- --
159.59 0.59 4.24 -- -- -- -- -- 0.449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.68 temperature 25 720 < th dose dependent sin 18 NA
2 108.77 temperature 25 720 < th dose dependent rect. 10 15
6 108.94 temperature 25 720 < th dose dependent rect. 13 12
11 109.11 temperature 25 90 < th dose dependent rect. 14 21
12 109.14 temperature 25 720 < th dose dependent rect. 15 8
29 109.40 temperature 25 10 < th dose dependent rect. 15 21
54 109.64 temperature 25 270 < th dose dependent rect. 8 21
60 109.69 temperature 25 270 < th dose dependent sin 13 NA
133 110.22 temperature 25 720 < th dose dependent rect. 19 2
148 110.28 temperature 25 90 < th dose dependent no NA NA
151 110.31 temperature 25 90 < th dose dependent rect. 19 23
163 110.38 temperature 25 10 < th dose dependent rect. 7 23
169 110.42 temperature 25 10 < th dose dependent rect. 9 23
173 110.43 temperature 25 90 < th dose dependent rect. 17 23
174 110.43 temperature 25 10 < th dose dependent rect. 21 23
179 110.45 temperature 25 10 < th dose dependent rect. 17 23
180 110.46 temperature 25 10 < th dose dependent no NA NA
184 110.47 temperature 25 10 < th dose dependent rect. 11 23
185 110.47 temperature 25 10 < th dose dependent rect. 19 23
193 110.50 temperature 25 30 < th dose dependent rect. 23 23
197 110.52 temperature 25 30 < th dose dependent rect. 1 23
234 110.70 temperature 25 10 < th dose dependent sin 11 NA
251 110.76 temperature 25 30 < th dose dependent rect. 3 23
261 110.81 temperature 25 90 < th dose dependent rect. 19 16
379 111.26 temperature 10 10 > th dose dependent sin 10 NA
398 111.34 temperature 15 720 > th dose dependent rect. 21 4
416 111.42 temperature 15 270 > th dose dependent rect. 21 11
460 111.60 temperature 20 270 > th dose independent rect. 12 21
550 111.96 temperature 10 720 > th dose dependent rect. 18 7
664 112.49 temperature 20 90 > th dose dependent rect. 23 10
703 112.64 temperature 20 270 > th dose independent rect. 13 17
814 113.06 temperature 10 720 > th dose dependent rect. 13 12
911 113.64 temperature 20 30 > th dose independent rect. 15 18
915 113.65 temperature 20 720 > th dose dependent rect. 23 1