Os02g0216400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os02g0216400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 257.69 | 0.754 | 2.94 | 0.384 | 0.00549 | 0.603 | -0.562 | 1.33 | -0.235 | 16.5 | 21.68 | 1419 | -- | -- |
| 261.27 | 0.753 | 3 | 0.045 | 0.0315 | 0.5 | 0.596 | -- | -0.342 | 4.39 | 22.2 | 2220 | -- | -- |
| 258.51 | 0.749 | 2.94 | 0.391 | 0.00914 | 0.595 | -- | 1.36 | -0.233 | 17.1 | 21.7 | 1395 | -- | -- |
| 262.22 | 0.754 | 2.99 | 0.022 | 0.0032 | 0.502 | -- | -- | -0.342 | 3.95 | 22.26 | 2216 | -- | -- |
| 258.51 | 0.749 | 2.94 | 0.392 | -- | 0.599 | -- | 1.37 | -0.234 | -- | 21.69 | 1395 | -- | -- |
| 270.42 | 0.771 | 2.95 | 0.234 | 0.0165 | -- | 0.571 | -- | -0.161 | 4.23 | -- | -- | -- | -- |
| 271.21 | 0.771 | 2.95 | 0.228 | 0.0466 | -- | -- | -- | -0.164 | 23.6 | -- | -- | -- | -- |
| 262.22 | 0.754 | 2.99 | 0.0215 | -- | 0.502 | -- | -- | -0.342 | -- | 22.26 | 2216 | -- | -- |
| 262.23 | 0.754 | 2.99 | -- | 0.00328 | 0.508 | -- | -- | -0.346 | 3.13 | 22.24 | 2216 | -- | -- |
| 271.35 | 0.77 | 2.95 | 0.229 | -- | -- | -- | -- | -0.163 | -- | -- | -- | -- | -- |
| 272.58 | 0.772 | 2.96 | -- | 0.0494 | -- | -- | -- | -0.189 | 23.9 | -- | -- | -- | -- |
| 262.23 | 0.754 | 2.99 | -- | -- | 0.508 | -- | -- | -0.346 | -- | 22.24 | 2216 | -- | -- |
| 272.73 | 0.771 | 2.96 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.91 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 20 | 1 |
| 7 | 254.65 | humidity | 90.0 | 90 | > th | dose independent | rect. | 19 | 1 |
| 8 | 254.99 | humidity | 90.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 25 | 257.24 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 32 | 257.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 20 | 22 |
| 33 | 257.55 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 47 | 258.02 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 19 |
| 55 | 258.22 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 23 |
| 56 | 258.22 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 57 | 258.26 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 20 |
| 72 | 258.50 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 81 | 258.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 85 | 258.62 | temperature | 30.0 | 10 | > th | dose independent | rect. | 9 | 8 |
| 108 | 258.70 | temperature | 30.0 | 10 | < th | dose independent | rect. | 8 | 11 |
| 132 | 258.97 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 138 | 259.00 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 141 | 259.00 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 146 | 259.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 168 | 259.14 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 210 | 259.30 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 227 | 259.37 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 24 | 17 |
| 233 | 259.39 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 234 | 259.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 238 | 259.40 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 241 | 259.41 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 14 | 23 |
| 280 | 259.49 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 322 | 259.59 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 328 | 259.60 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 345 | 259.65 | temperature | 25.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 351 | 259.65 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 364 | 259.69 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 365 | 259.69 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 366 | 259.69 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 386 | 259.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 398 | 259.75 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 402 | 259.76 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 518 | 259.96 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 559 | 260.03 | temperature | 30.0 | 10 | > th | dose independent | sin | 1 | NA |
| 728 | 260.25 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 773 | 260.31 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 821 | 260.38 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 19 |
| 846 | 260.42 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 849 | 260.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 893 | 260.49 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 930 | 260.54 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 932 | 260.54 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 958 | 260.57 | humidity | 90.0 | 10 | > th | dose independent | rect. | 13 | 8 |
| 972 | 260.59 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 8 | 9 |
| 993 | 260.62 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |