Os02g0216100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0216100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.9 | 0.579 | 4.27 | 2.13 | 3 | -1.93 | -0.419 | 4.11 | 0.169 | 22.2 | 24.15 | 877 | -- | -- |
| 157.39 | 0.584 | 4.39 | 1.26 | 2.83 | -1.36 | -0.156 | -- | -0.161 | 22.3 | 25.79 | 1009 | -- | -- |
| 152.47 | 0.575 | 4.29 | 2.03 | 3 | -1.9 | -- | 3.63 | 0.127 | 22.2 | 24.35 | 879 | -- | -- |
| 156.89 | 0.583 | 4.38 | 1.28 | 2.89 | -1.5 | -- | -- | -0.102 | 22.2 | 24.82 | 933 | -- | -- |
| 508.94 | 1.06 | 4.23 | 1.73 | -- | -1.96 | -- | 3.95 | 0.122 | -- | 23.89 | 1531 | -- | -- |
| 213.14 | 0.684 | 4.4 | 0.899 | 2.48 | -- | -0.298 | -- | -0.236 | 22.3 | -- | -- | -- | -- |
| 213.49 | 0.684 | 4.4 | 0.911 | 2.48 | -- | -- | -- | -0.236 | 22.3 | -- | -- | -- | -- |
| 498.3 | 1.04 | 4.27 | 1.29 | -- | -1.91 | -- | -- | 0.0516 | -- | 22.46 | 1546 | -- | -- |
| 197.52 | 0.655 | 4.43 | -- | 2.72 | -1.07 | -- | -- | -0.348 | 22.4 | 26.46 | 1029 | -- | -- |
| 589.08 | 1.13 | 4.33 | 0.95 | -- | -- | -- | -- | -0.228 | -- | -- | -- | -- | -- |
| 235.36 | 0.718 | 4.42 | -- | 2.49 | -- | -- | -- | -0.337 | 22.3 | -- | -- | -- | -- |
| 541.05 | 1.09 | 4.31 | -- | -- | -1.67 | -- | -- | -0.122 | -- | 22.46 | 1546 | -- | -- |
| 612.87 | 1.16 | 4.36 | -- | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 3 | 147.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 24 | 149.41 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 82 | 152.28 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 102 | 152.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 170 | 154.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 172 | 154.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 208 | 154.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 11 |
| 233 | 155.17 | temperature | 30 | 90 | < th | dose dependent | sin | 15 | NA |
| 255 | 155.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 287 | 155.88 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 410 | 157.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 424 | 157.23 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 446 | 157.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 463 | 157.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 468 | 157.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 599 | 158.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 655 | 158.90 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 702 | 159.26 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 768 | 159.63 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 15 |
| 806 | 159.85 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 817 | 159.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 818 | 159.92 | radiation | 1 | 4320 | > th | dose independent | sin | 13 | NA |
| 831 | 159.95 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 839 | 159.99 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 14 |
| 840 | 159.99 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 18 |
| 856 | 160.08 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 893 | 160.23 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 13 |
| 914 | 160.27 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 923 | 160.31 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 966 | 160.45 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 968 | 160.46 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 21 |
| 981 | 160.49 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 996 | 160.55 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |