Os02g0215900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor kinase-like protein.
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Os02g0215900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Receptor kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.8 | 0.428 | 3.37 | 0.349 | 0.536 | -0.202 | 0.46 | -0.361 | 0.23 | 0.174 | 24.54 | 214 | -- | -- |
| 83.24 | 0.425 | 3.38 | 0.242 | 0.544 | -0.214 | 0.399 | -- | 0.191 | 0.145 | 24.6 | 196 | -- | -- |
| 83.66 | 0.426 | 3.37 | 0.294 | 0.535 | -0.202 | -- | -0.232 | 0.216 | 0.175 | 24.6 | 213 | -- | -- |
| 83.86 | 0.427 | 3.38 | 0.232 | 0.533 | -0.213 | -- | -- | 0.192 | 0.165 | 24.5 | 213 | -- | -- |
| 92.24 | 0.447 | 3.38 | 0.191 | -- | -0.481 | -- | -0.134 | 0.147 | -- | 25.2 | 878 | -- | -- |
| 85.87 | 0.434 | 3.35 | 0.304 | 0.497 | -- | 0.372 | -- | 0.307 | 23.3 | -- | -- | -- | -- |
| 86.46 | 0.435 | 3.35 | 0.288 | 0.495 | -- | -- | -- | 0.305 | 23.3 | -- | -- | -- | -- |
| 92.28 | 0.447 | 3.38 | 0.15 | -- | -0.49 | -- | -- | 0.135 | -- | 25.2 | 878 | -- | -- |
| 85.07 | 0.43 | 3.39 | -- | 0.551 | -0.25 | -- | -- | 0.153 | 0.287 | 24.6 | 220 | -- | -- |
| 101.78 | 0.471 | 3.34 | 0.301 | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
| 88.66 | 0.44 | 3.36 | -- | 0.498 | -- | -- | -- | 0.273 | 23.3 | -- | -- | -- | -- |
| 92.84 | 0.449 | 3.39 | -- | -- | -0.52 | -- | -- | 0.111 | -- | 25.3 | 881 | -- | -- |
| 104.16 | 0.476 | 3.35 | -- | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.81 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 10 |
| 7 | 80.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 21 | 6 |
| 20 | 80.40 | temperature | 25.0 | 270 | < th | dose independent | sin | 13 | NA |
| 29 | 80.57 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 33 | 80.64 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 44 | 80.76 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 21 | 6 |
| 54 | 80.85 | temperature | 25.0 | 270 | > th | dose independent | sin | 13 | NA |
| 57 | 80.86 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 63 | 80.94 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 85 | 81.10 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 2 |
| 91 | 81.18 | temperature | 25.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 99 | 81.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 21 | 2 |
| 102 | 81.25 | temperature | 25.0 | 10 | < th | dose dependent | sin | 14 | NA |
| 122 | 81.33 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 18 | 13 |
| 124 | 81.36 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 125 | 81.36 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 129 | 81.38 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 131 | 81.38 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 18 | 11 |
| 145 | 81.42 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 149 | 81.43 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 151 | 81.44 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 177 | 81.53 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 179 | 81.53 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 12 |
| 180 | 81.53 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 188 | 81.56 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 195 | 81.58 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 204 | 81.59 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 217 | 81.61 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 5 |
| 219 | 81.61 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 18 | 7 |
| 222 | 81.62 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 12 |
| 224 | 81.62 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 275 | 81.67 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 278 | 81.67 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 283 | 81.67 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 285 | 81.67 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 290 | 81.67 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 292 | 81.67 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 293 | 81.67 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 298 | 81.67 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 303 | 81.68 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 308 | 81.69 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 312 | 81.69 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 317 | 81.70 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 404 | 81.78 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 439 | 81.83 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 460 | 81.84 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 3 |
| 482 | 81.86 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 527 | 81.91 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 20 |
| 561 | 81.94 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 586 | 81.99 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 593 | 82.00 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 595 | 82.00 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 599 | 82.00 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 612 | 82.01 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 658 | 82.04 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 671 | 82.05 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 679 | 82.06 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 687 | 82.07 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 688 | 82.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 691 | 82.07 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 695 | 82.07 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 704 | 82.07 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 705 | 82.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 726 | 82.07 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 754 | 82.09 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 3 |
| 865 | 82.24 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 883 | 82.27 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 18 |
| 929 | 82.33 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 10 |
| 942 | 82.35 | temperature | 25.0 | 10 | < th | dose independent | rect. | 19 | 11 |