Os02g0215700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0215700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 358.75 | 0.89 | 6.4 | 1.95 | 2.3 | 2.26 | -0.557 | -8.44 | 2.35 | 23.2 | 0.933 | 4334 | 6.12 | 1.03 |
| 416.09 | 0.957 | 6.25 | 2.48 | 2.3 | 0.864 | -0.448 | -- | 2.02 | 23.1 | 4.142 | 4460 | 6.2 | 1.08 |
| 359.59 | 0.883 | 6.4 | 1.93 | 2.3 | 2.34 | -- | -8.68 | 2.35 | 23.2 | 0.8895 | 4336 | 6.11 | 1.02 |
| 412.31 | 0.946 | 6.25 | 2.35 | 2.31 | 0.751 | -- | -- | 2.1 | 23.2 | 11.78 | 4372 | 6.14 | 1.14 |
| 686.1 | 1.22 | 6.39 | 1.87 | -- | 2.3 | -- | -8.85 | 2.26 | -- | 0.7 | 4330 | 6.12 | 1.03 |
| 423.46 | 0.965 | 6.22 | 2.48 | 2.26 | -- | -0.417 | -- | 2.14 | 23.3 | -- | -- | -- | -- |
| 424.2 | 0.965 | 6.22 | 2.49 | 2.26 | -- | -- | -- | 2.14 | 23.3 | -- | -- | -- | -- |
| 742.23 | 1.27 | 6.16 | 2.56 | -- | 0.627 | -- | -- | 2.17 | -- | 0.3453 | 4331 | 5.95 | 1.91 |
| 558.59 | 1.1 | 6.25 | -- | 2.38 | 1.2 | -- | -- | 2.12 | 23.2 | 11.78 | 4341 | 6.09 | 1.29 |
| 743.2 | 1.27 | 6.17 | 2.55 | -- | -- | -- | -- | 2.16 | -- | -- | -- | -- | -- |
| 588.15 | 1.13 | 6.28 | -- | 2.28 | -- | -- | -- | 1.86 | 23.4 | -- | -- | -- | -- |
| 870.53 | 1.37 | 6.17 | -- | -- | 1.4 | -- | -- | 2.18 | -- | 0.0005277 | 4349 | 5.87 | 1.57 |
| 914.85 | 1.41 | 6.23 | -- | -- | -- | -- | -- | 1.88 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 363.50 | wind | 1e+00 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 2 | 366.01 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 5 | 370.11 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 6 | 371.83 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 7 | 372.05 | wind | 1e+00 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 8 | 372.14 | wind | 1e+00 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 9 | 372.61 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 11 | 372.72 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 12 | 373.01 | wind | 1e+00 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 20 | 373.58 | radiation | 2e+01 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 21 | 373.59 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 38 | 373.68 | wind | 1e+00 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 40 | 373.85 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 5 | 13 |
| 49 | 374.28 | wind | 1e+00 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 77 | 374.69 | wind | 1e+00 | 43200 | < th | dose dependent | sin | 9 | NA |
| 80 | 374.71 | radiation | 4e+01 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 85 | 374.78 | radiation | 4e+01 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 113 | 375.01 | radiation | 1e+01 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 114 | 375.02 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 131 | 375.18 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 136 | 375.20 | wind | 1e+00 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 184 | 375.51 | atmosphere | 1e+03 | 14400 | > th | dose independent | sin | 20 | NA |
| 205 | 375.60 | wind | 1e+00 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 211 | 375.63 | atmosphere | 1e+03 | 14400 | < th | dose independent | sin | 20 | NA |
| 345 | 376.13 | radiation | 2e+01 | 43200 | > th | dose independent | sin | 13 | NA |
| 416 | 376.31 | radiation | 1e+01 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 468 | 376.45 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 489 | 376.46 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 535 | 376.51 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 600 | 376.58 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 606 | 376.59 | atmosphere | 1e+03 | 14400 | > th | dose independent | no | NA | NA |
| 648 | 376.64 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 663 | 376.66 | wind | 1e+00 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 679 | 376.69 | atmosphere | 1e+03 | 14400 | < th | dose independent | no | NA | NA |
| 723 | 376.81 | humidity | 8e+01 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 758 | 376.94 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 768 | 377.00 | precipitation | 1e-01 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 777 | 377.05 | precipitation | 1e-01 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 779 | 377.05 | precipitation | 1e-01 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 793 | 377.17 | radiation | 2e+01 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 794 | 377.17 | radiation | 3e+01 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 812 | 377.28 | radiation | 2e+01 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 905 | 377.67 | atmosphere | 1e+03 | 14400 | < th | dose dependent | rect. | 16 | 1 |