Os02g0215500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0215500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.34 | 0.66 | 3.11 | 0.452 | 0.0949 | -0.149 | 0.134 | 2.71 | 0.382 | 6.49 | 20.62 | 3930 | -- | -- |
| 199.69 | 0.658 | 3.17 | 0.299 | 0.13 | -0.907 | 0.0761 | -- | 0.489 | 5.99 | 22.3 | 13099 | -- | -- |
| 197.38 | 0.654 | 3.11 | 0.455 | 0.0962 | -0.151 | -- | 2.71 | 0.382 | 6.11 | 20.63 | 3929 | -- | -- |
| 199.71 | 0.658 | 3.17 | 0.31 | 0.115 | -0.89 | -- | -- | 0.492 | 6.1 | 22.33 | 13097 | -- | -- |
| 197.86 | 0.655 | 3.11 | 0.455 | -- | -0.148 | -- | 2.7 | 0.383 | -- | 20.62 | 3929 | -- | -- |
| 214.09 | 0.686 | 3.26 | -0.401 | 0.0857 | -- | 0.211 | -- | 0.0945 | 6.22 | -- | -- | -- | -- |
| 214.19 | 0.685 | 3.26 | -0.398 | 0.0871 | -- | -- | -- | 0.0939 | 6.61 | -- | -- | -- | -- |
| 200.04 | 0.659 | 3.17 | 0.258 | -- | -0.877 | -- | -- | 0.49 | -- | 22.5 | 13251 | -- | -- |
| 200.29 | 0.659 | 3.18 | -- | 0.0965 | -0.722 | -- | -- | 0.419 | 6 | 22.67 | 13117 | -- | -- |
| 214.59 | 0.684 | 3.26 | -0.396 | -- | -- | -- | -- | 0.0956 | -- | -- | -- | -- | -- |
| 218.37 | 0.691 | 3.25 | -- | 0.0823 | -- | -- | -- | 0.138 | 6.89 | -- | -- | -- | -- |
| 200.76 | 0.66 | 3.18 | -- | -- | -0.72 | -- | -- | 0.42 | -- | 22.66 | 13223 | -- | -- |
| 218.72 | 0.69 | 3.25 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 2 | 191.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 5 | 191.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 128 | 193.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 132 | 194.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 7 |
| 139 | 194.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 141 | 194.13 | temperature | 20 | 4320 | > th | dose independent | sin | 9 | NA |
| 143 | 194.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 163 | 194.29 | temperature | 20 | 4320 | < th | dose independent | sin | 9 | NA |
| 192 | 194.56 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 271 | 195.28 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 323 | 195.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 329 | 195.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 336 | 195.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 339 | 195.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 348 | 195.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 352 | 195.72 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 359 | 195.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 393 | 195.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 498 | 196.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 512 | 196.16 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 525 | 196.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 563 | 196.35 | humidity | 90 | 14400 | > th | dose independent | sin | 3 | NA |
| 681 | 196.72 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 683 | 196.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 700 | 196.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 704 | 196.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 706 | 196.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 766 | 196.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 814 | 196.98 | temperature | 20 | 4320 | > th | dose dependent | sin | 12 | NA |
| 843 | 197.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 8 |
| 859 | 197.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 861 | 197.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 866 | 197.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 22 |
| 880 | 197.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 928 | 197.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 939 | 197.14 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 945 | 197.15 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 958 | 197.16 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 962 | 197.16 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 975 | 197.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 994 | 197.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 10 |