Os02g0215400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0215400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.62 | 0.411 | 9.08 | 0.266 | 0.321 | -0.0786 | 0.383 | 5.23 | 0.337 | 0.245 | 29.9 | 3303 | -- | -- |
| 78.99 | 0.414 | 9.01 | 1.09 | 0.322 | 0.524 | 0.217 | -- | 0.367 | 0.233 | 29.8 | 3310 | -- | -- |
| 77.09 | 0.409 | 9.08 | 0.228 | 0.321 | -0.0706 | -- | 5.11 | 0.325 | 23.9 | 29.8 | 3306 | -- | -- |
| 78.83 | 0.414 | 8.98 | 1.14 | 0.324 | 0.531 | -- | -- | 0.377 | 23.7 | 30.3 | 3286 | -- | -- |
| 83.48 | 0.426 | 9.07 | 0.228 | -- | -0.111 | -- | 5.05 | 0.331 | -- | 29.8 | 3249 | -- | -- |
| 87.24 | 0.438 | 8.96 | 1.02 | 0.293 | -- | 0.264 | -- | 0.466 | 23.9 | -- | -- | -- | -- |
| 87.51 | 0.438 | 8.96 | 1.01 | 0.293 | -- | -- | -- | 0.466 | 23.5 | -- | -- | -- | -- |
| 85.49 | 0.431 | 8.97 | 1.14 | -- | 0.491 | -- | -- | 0.386 | -- | 30.4 | 3262 | -- | -- |
| 111.44 | 0.494 | 9 | -- | 0.274 | 0.34 | -- | -- | 0.324 | 22.9 | 30.3 | 3286 | -- | -- |
| 92.89 | 0.45 | 8.96 | 1.02 | -- | -- | -- | -- | 0.469 | -- | -- | -- | -- | -- |
| 114.43 | 0.5 | 8.99 | -- | 0.305 | -- | -- | -- | 0.353 | 23.7 | -- | -- | -- | -- |
| 115.85 | 0.503 | 8.99 | -- | -- | 0.41 | -- | -- | 0.323 | -- | 30.85 | 4415 | -- | -- |
| 120.27 | 0.512 | 8.98 | -- | -- | -- | -- | -- | 0.356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.93 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 8 |
| 5 | 74.62 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 18 |
| 13 | 75.10 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 14 | 75.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 17 | 75.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 20 | 75.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 26 | 75.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 37 | 75.41 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 46 | 75.51 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 16 |
| 53 | 75.57 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 70 | 75.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 85 | 75.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 112 | 75.92 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 122 | 75.97 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 127 | 76.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 134 | 76.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 141 | 76.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 18 |
| 145 | 76.13 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 8 |
| 150 | 76.15 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 22 |
| 153 | 76.16 | temperature | 30 | 270 | > th | dose independent | sin | 2 | NA |
| 194 | 76.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 218 | 76.37 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 276 | 76.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 12 |
| 279 | 76.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 14 |
| 296 | 76.51 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 352 | 76.60 | temperature | 30 | 270 | < th | dose independent | sin | 2 | NA |
| 355 | 76.61 | temperature | 30 | 270 | < th | dose independent | sin | 4 | NA |
| 359 | 76.62 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 426 | 76.69 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 429 | 76.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 442 | 76.72 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 477 | 76.79 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 496 | 76.82 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 504 | 76.82 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 531 | 76.83 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 23 |
| 533 | 76.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 541 | 76.85 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 1 |
| 575 | 76.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 588 | 76.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 592 | 76.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 593 | 76.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 628 | 76.91 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 635 | 76.91 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 23 |
| 659 | 76.95 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 678 | 76.96 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 713 | 76.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 749 | 77.04 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 755 | 77.04 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 766 | 77.05 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 780 | 77.06 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 785 | 77.07 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 796 | 77.08 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 12 |
| 798 | 77.08 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 18 |
| 804 | 77.09 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 841 | 77.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 922 | 77.20 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 966 | 77.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 17 |