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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0214500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : No apical meristem (NAM) protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0308) R2 : 0.00688
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.115 (0.0648) R2dN8 : 0.00889 R2N8 : 0.00688
σ : 0.58
deviance : 154.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
144.85 0.565 2.98 0.293 0.78 0.694 -0.439 -0.524 0.192 12 0.3001 91 -- --
145.67 0.562 2.98 0.341 0.83 0.687 -0.115 -- 0.203 11.9 0.2993 91 -- --
145.19 0.561 2.98 0.26 0.779 0.697 -- -0.293 0.195 12.1 0.3306 98 -- --
145.1 0.561 2.98 0.262 0.772 0.687 -- -- 0.185 12 0.3 91 -- --
151.79 0.574 3.01 0.21 -- 0.0603 -- -0.481 0.135 -- 34.67 180 -- --
152.27 0.578 3.01 0.211 0.109 -- -0.147 -- 0.136 5.03 -- -- -- --
152.32 0.578 3.01 0.212 0.109 -- -- -- 0.136 5.3 -- -- -- --
151.39 0.573 3.01 0.276 -- 0.123 -- -- 0.13 -- 0.0003317 84 -- --
146.97 0.565 2.98 -- 0.735 0.66 -- -- 0.176 12 0.3524 90 -- --
152.94 0.578 3.01 0.215 -- -- -- -- 0.139 -- -- -- -- --
153.5 0.58 3.01 -- 0.112 -- -- -- 0.113 5.23 -- -- -- --
152.58 0.575 3.01 -- -- 0.124 -- -- 0.131 -- 0.001461 84 -- --
154.16 0.58 3.01 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 140.27 temperature 20.0 90 < th dose independent rect. 16 4
2 140.28 temperature 20.0 90 < th dose dependent rect. 17 2
3 140.30 temperature 20.0 90 < th dose independent rect. 17 2
15 140.62 temperature 20.0 90 < th dose dependent rect. 12 8
22 140.76 wind 9.0 4320 < th dose independent rect. 3 1
26 140.79 temperature 20.0 270 < th dose independent rect. 8 12
128 142.45 humidity 90.0 1440 > th dose independent rect. 12 1
129 142.45 humidity 90.0 1440 > th dose dependent rect. 12 1
135 142.59 humidity 90.0 1440 < th dose independent rect. 11 2
138 142.78 wind 7.0 10 > th dose independent rect. 19 1
145 142.78 wind 7.0 10 > th dose dependent rect. 19 1
172 143.01 wind 9.0 4320 < th dose independent rect. 3 4
183 143.13 humidity 80.0 90 < th dose independent rect. 19 2
186 143.26 temperature 20.0 1440 < th dose dependent rect. 19 1
188 143.27 humidity 80.0 90 < th dose dependent rect. 19 3
197 143.41 temperature 20.0 1440 < th dose independent rect. 12 7
200 143.42 temperature 20.0 1440 < th dose dependent rect. 12 8
209 143.52 temperature 25.0 90 > th dose independent rect. 2 1
211 143.56 temperature 25.0 90 > th dose dependent rect. 1 3
214 143.63 temperature 25.0 90 > th dose dependent rect. 2 1
215 143.66 atmosphere 1005.0 30 > th dose dependent rect. 2 1
216 143.69 atmosphere 1005.0 30 > th dose independent rect. 2 1
217 143.69 wind 3.0 30 < th dose dependent rect. 2 1
221 143.71 wind 3.0 30 < th dose independent rect. 2 1
232 143.73 humidity 90.0 30 > th dose independent rect. 2 1
233 143.73 humidity 50.0 30 > th dose dependent rect. 2 1
238 143.74 temperature 10.0 30 > th dose independent rect. 2 1
240 143.74 temperature 25.0 30 < th dose independent rect. 2 1
242 143.74 humidity 50.0 30 > th dose independent rect. 2 1
246 143.74 atmosphere 995.0 30 > th dose independent rect. 2 1
248 143.74 atmosphere 1010.0 30 < th dose independent rect. 2 1
250 143.74 radiation 1.0 30 < th dose independent rect. 2 1
255 143.74 precipitation 0.1 30 < th dose independent rect. 2 1
256 143.74 temperature 10.0 30 > th dose independent rect. 3 23
258 143.74 radiation 1.0 30 < th dose dependent rect. 2 1
263 143.74 precipitation 0.1 30 < th dose dependent rect. 2 1
265 143.77 temperature 25.0 90 > th dose independent rect. 1 3
266 143.77 precipitation 0.1 30 < th dose independent rect. 3 23
267 143.77 precipitation 0.1 30 < th dose dependent rect. 3 23
268 143.80 atmosphere 1015.0 30 < th dose dependent rect. 2 1
271 143.82 temperature 30.0 30 < th dose dependent rect. 2 1
286 143.89 wind 1.0 30 > th dose independent rect. 2 1
287 143.89 atmosphere 1000.0 30 > th dose independent rect. 3 23
291 143.91 wind 9.0 4320 > th dose independent rect. 3 1
307 143.91 temperature 20.0 1440 < th dose independent rect. 12 2
325 143.91 wind 9.0 4320 > th dose dependent rect. 3 1
333 143.91 temperature 20.0 1440 < th dose dependent rect. 12 1
385 144.02 temperature 20.0 1440 > th dose independent rect. 11 2
425 144.11 radiation 10.0 14400 < th dose dependent rect. 3 1
429 144.12 temperature 10.0 1440 > th dose independent rect. 3 1
432 144.12 temperature 30.0 1440 < th dose independent rect. 3 1
436 144.12 humidity 50.0 1440 > th dose independent rect. 3 1
445 144.12 atmosphere 995.0 1440 > th dose independent rect. 3 1
446 144.12 radiation 1.0 1440 < th dose independent rect. 3 1
466 144.12 temperature 10.0 1440 > th dose independent rect. 4 23
469 144.12 radiation 1.0 1440 < th dose dependent rect. 3 1
482 144.14 temperature 20.0 1440 < th dose independent rect. 17 2
496 144.21 temperature 20.0 1440 > th dose independent rect. 12 6
505 144.24 temperature 20.0 1440 > th dose independent rect. 17 1
507 144.24 temperature 20.0 1440 > th dose independent rect. 15 3
528 144.38 wind 1.0 10 > th dose independent rect. 20 23
529 144.38 wind 9.0 30 < th dose independent rect. 3 23
553 144.51 radiation 1.0 90 < th dose dependent rect. 1 23
559 144.58 radiation 1.0 90 < th dose dependent rect. 1 19
609 144.75 temperature 20.0 720 > th dose independent rect. 7 1
618 144.76 temperature 10.0 720 > th dose dependent rect. 5 3
634 144.88 temperature 20.0 720 < th dose dependent rect. 7 1
638 144.95 temperature 20.0 720 > th dose independent rect. 6 9
650 144.96 temperature 20.0 720 < th dose dependent rect. 7 5
651 144.97 radiation 1.0 90 < th dose dependent rect. 14 17
654 144.99 humidity 80.0 10 < th dose dependent rect. 20 1
673 145.02 temperature 20.0 720 < th dose dependent rect. 7 10
689 145.07 wind 3.0 30 < th dose dependent rect. 2 4
690 145.08 radiation 1.0 90 < th dose dependent rect. 14 20
696 145.09 radiation 1.0 90 < th dose dependent rect. 14 23
721 145.14 radiation 1.0 90 < th dose dependent rect. 9 22
725 145.15 wind 3.0 10 < th dose dependent rect. 11 2
749 145.26 radiation 1.0 90 < th dose dependent no NA NA
762 145.33 temperature 20.0 1440 < th dose independent rect. 19 1
763 145.33 radiation 1.0 90 < th dose dependent rect. 23 23
766 145.36 temperature 20.0 1440 > th dose independent rect. 19 1
769 145.37 wind 5.0 90 > th dose independent rect. 18 3
772 145.37 radiation 1.0 90 < th dose independent rect. 1 19
795 145.43 radiation 1.0 90 < th dose independent rect. 1 23
823 145.53 humidity 50.0 30 > th dose independent rect. 3 23
824 145.53 temperature 20.0 1440 < th dose dependent sin 20 NA
827 145.54 radiation 1.0 90 < th dose dependent sin 1 NA
847 145.59 radiation 1.0 90 < th dose dependent rect. 17 23
858 145.63 temperature 30.0 30 < th dose independent rect. 3 23
890 145.69 wind 1.0 10 > th dose independent rect. 13 23
892 145.70 radiation 1.0 90 < th dose independent rect. 14 17
906 145.76 atmosphere 1005.0 30 > th dose dependent rect. 19 1
909 145.77 temperature 10.0 30 > th dose dependent rect. 6 20
910 145.78 wind 1.0 10 > th dose independent rect. 22 13
911 145.78 wind 1.0 270 < th dose dependent rect. 7 1
922 145.85 temperature 25.0 10 < th dose independent rect. 2 19
930 145.86 radiation 1.0 90 < th dose independent rect. 9 22
940 145.88 radiation 1.0 720 > th dose independent rect. 13 2
953 145.90 wind 1.0 10 > th dose independent sin 12 NA
991 145.95 radiation 1.0 90 < th dose independent rect. 14 20
993 145.95 radiation 1.0 90 < th dose independent rect. 14 23