Os02g0214400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment).
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Os02g0214400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectate lyase homolog (EC 4.2.2.2) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.85 | 0.634 | 3.62 | 0.442 | 0.987 | -1.51 | -0.349 | -0.581 | -0.0357 | 22.1 | 20.3 | 1710 | -- | -- |
| 182.59 | 0.629 | 3.61 | 0.551 | 1 | -1.41 | -0.411 | -- | -0.0171 | 22.1 | 20.4 | 1837 | -- | -- |
| 182.33 | 0.629 | 3.62 | 0.457 | 0.989 | -1.52 | -- | -0.592 | -0.0338 | 22.1 | 20.29 | 1709 | -- | -- |
| 182.99 | 0.63 | 3.6 | 0.554 | 0.997 | -1.44 | -- | -- | -0.0129 | 22.1 | 20.21 | 1730 | -- | -- |
| 232.36 | 0.714 | 3.59 | 0.35 | -- | -1 | -- | 0.654 | -0.106 | -- | 20.29 | 1709 | -- | -- |
| 223.53 | 0.701 | 3.67 | -0.063 | 0.977 | -- | -0.501 | -- | -0.326 | 22.2 | -- | -- | -- | -- |
| 224.53 | 0.702 | 3.67 | -0.0431 | 0.98 | -- | -- | -- | -0.324 | 22.1 | -- | -- | -- | -- |
| 234.6 | 0.716 | 3.6 | 0.235 | -- | -1.03 | -- | -- | -0.133 | -- | 20.29 | 1709 | -- | -- |
| 189.68 | 0.641 | 3.62 | -- | 1 | -1.18 | -- | -- | -0.112 | 22.1 | 20.21 | 1695 | -- | -- |
| 282.64 | 0.786 | 3.65 | -0.0297 | -- | -- | -- | -- | -0.323 | -- | -- | -- | -- | -- |
| 224.58 | 0.701 | 3.67 | -- | 0.98 | -- | -- | -- | -0.319 | 22.1 | -- | -- | -- | -- |
| 236 | 0.718 | 3.61 | -- | -- | -1 | -- | -- | -0.164 | -- | 20.29 | 1709 | -- | -- |
| 282.67 | 0.785 | 3.64 | -- | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 176.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 2 | 176.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 4 | 176.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 7 |
| 25 | 179.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 26 | 179.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 28 | 179.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 69 | 180.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 94 | 181.81 | temperature | 20 | 30 | > th | dose independent | rect. | 3 | 23 |
| 104 | 182.16 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 113 | 182.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 116 | 182.63 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 135 | 183.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 146 | 183.33 | temperature | 25 | 1440 | < th | dose dependent | sin | 4 | NA |
| 163 | 183.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 183 | 183.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 191 | 183.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 210 | 184.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 222 | 184.21 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 228 | 184.26 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 229 | 184.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 252 | 184.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 260 | 184.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 314 | 184.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 317 | 184.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 318 | 184.68 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 333 | 184.73 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 346 | 184.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 347 | 184.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 350 | 184.78 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 354 | 184.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 366 | 184.81 | temperature | 25 | 270 | < th | dose dependent | sin | 18 | NA |
| 371 | 184.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 464 | 185.07 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 512 | 185.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 528 | 185.22 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 537 | 185.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 539 | 185.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 542 | 185.26 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 548 | 185.26 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 555 | 185.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 567 | 185.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 579 | 185.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 587 | 185.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 589 | 185.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 654 | 185.55 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 12 |
| 715 | 185.70 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 733 | 185.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 10 |
| 741 | 185.76 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 768 | 185.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 824 | 185.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 22 |
| 887 | 186.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 906 | 186.05 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 941 | 186.10 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |