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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0213100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.34 (0.0557) R2 : 0.618
β1 : -1.33 (0.223) R2dD : 0.0462 R2D : 0.0315
β2 : 2.19 (0.123) R2dC : 0.274 R2C : 0.329
β3 : 7.71 (0.519) R2dE : 0.581 R2E : 0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.3 (1.61) R2dD*E : 0.231 R2D*E : -0.478
γ1 : -0.073 (0.112) R2dN8 : 0.000539 R2N8 : -0.0119
σ : 0.932
deviance : 400.13
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_____
C
peak time of C : 2.12
E
wheather : radiation
threshold : 0.969
memory length : 1458
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 22.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.51 0.928 5.34 -1.44 2.07 7.77 -1.75 13.8 -0.0984 2.36 1.021 1466 18.1 22.9
444.2 0.982 5.29 -0.881 1.51 4.25 -0.887 -- 0.0531 2.47 2.487 1547 17.8 24
400.13 0.932 5.34 -1.33 2.19 7.71 -- 13.3 -0.073 2.12 0.969 1458 18.2 22.9
426.38 0.962 5.18 -0.687 2.16 3.89 -- -- 0.113 2.31 2.517 1475 4.7 23.3
509.21 1.05 5.33 -0.841 -- 9.26 -- 12.8 0.0723 -- 1.099 1523 18.3 22.6
610.79 1.16 5.24 -1.57 2.5 -- -1.04 -- -0.346 1.79 -- -- -- --
614.89 1.16 5.24 -1.54 2.49 -- -- -- -0.339 1.71 -- -- -- --
450.15 0.988 5.13 -0.609 -- 5.76 -- -- 0.164 -- 2.49 1620 17.9 22.8
439.39 0.976 5.18 -- 2.2 4.21 -- -- 0.125 2.27 2.252 1482 4.88 23.1
992.93 1.47 5.21 -1.43 -- -- -- -- -0.283 -- -- -- -- --
677.05 1.22 5.2 -- 2.46 -- -- -- -0.168 1.69 -- -- -- --
454.87 0.993 5.08 -- -- 5.97 -- -- 0.27 -- 2.251 1648 17.9 23.3
1047.21 1.51 5.18 -- -- -- -- -- -0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.05 radiation 1 1440 < th dose dependent rect. 18 23
2 410.52 humidity 80 1440 < th dose independent rect. 6 9
6 411.79 humidity 80 1440 < th dose independent sin 2 NA
13 412.89 radiation 1 1440 < th dose dependent rect. 21 20
19 413.48 radiation 1 1440 < th dose dependent rect. 2 15
20 413.49 radiation 1 1440 < th dose dependent rect. 5 12
29 415.20 radiation 1 1440 < th dose independent rect. 18 23
30 415.25 radiation 1 1440 > th dose independent rect. 18 23
37 417.00 humidity 80 1440 > th dose independent rect. 6 9
38 417.17 humidity 80 1440 > th dose independent sin 2 NA
39 417.35 radiation 1 1440 < th dose dependent sin 1 NA
44 418.28 radiation 1 1440 > th dose independent rect. 11 21
45 418.34 radiation 1 1440 < th dose independent rect. 11 21
71 419.96 humidity 80 1440 < th dose independent rect. 6 14
72 420.00 humidity 60 720 > th dose dependent rect. 17 6
85 420.77 humidity 80 1440 > th dose independent rect. 6 15
95 421.06 radiation 1 1440 < th dose dependent rect. 11 21
103 421.39 radiation 1 1440 < th dose independent rect. 16 23
104 421.39 radiation 1 1440 < th dose dependent rect. 5 22
110 421.50 radiation 1 1440 < th dose dependent rect. 5 20
114 421.54 radiation 1 1440 < th dose independent rect. 5 22
117 421.56 radiation 1 1440 > th dose independent rect. 16 23
122 421.64 radiation 1 1440 > th dose independent rect. 5 14
129 421.64 radiation 1 1440 < th dose independent rect. 5 20
144 421.83 radiation 1 1440 < th dose independent rect. 5 15
147 421.87 radiation 1 1440 < th dose dependent rect. 5 15
159 422.03 radiation 1 1440 < th dose dependent rect. 2 23
162 422.07 radiation 1 1440 < th dose independent rect. 2 23
165 422.08 radiation 1 1440 < th dose dependent rect. 21 23
166 422.09 radiation 1 1440 < th dose independent rect. 22 22
169 422.13 radiation 1 1440 < th dose dependent no NA NA
172 422.15 radiation 1 1440 > th dose independent no NA NA
173 422.15 radiation 1 1440 < th dose independent no NA NA
233 422.21 radiation 1 1440 < th dose dependent rect. 24 23
249 422.26 radiation 1 1440 < th dose independent rect. 2 18
279 422.40 radiation 1 1440 < th dose dependent rect. 2 18
324 422.80 humidity 70 720 > th dose dependent rect. 18 3
329 422.92 humidity 50 1440 > th dose dependent rect. 16 22
332 423.09 humidity 60 1440 > th dose dependent rect. 2 21
362 423.65 humidity 90 720 < th dose dependent rect. 18 6
363 423.67 radiation 1 1440 > th dose independent sin 1 NA
366 423.72 radiation 1 1440 < th dose independent sin 1 NA
381 424.15 radiation 1 1440 < th dose dependent rect. 7 23
400 424.44 humidity 50 1440 > th dose dependent rect. 13 23
442 425.21 humidity 50 1440 > th dose dependent rect. 11 23
447 425.34 humidity 50 1440 > th dose dependent no NA NA
449 425.36 humidity 50 1440 > th dose dependent rect. 22 23
464 425.57 radiation 1 1440 < th dose dependent rect. 16 23
492 425.90 humidity 50 1440 > th dose dependent rect. 20 23
562 426.92 humidity 50 720 > th dose dependent rect. 16 9
657 429.07 radiation 1 1440 > th dose independent rect. 5 12
661 429.09 radiation 1 1440 < th dose independent rect. 5 12
664 429.13 humidity 90 1440 < th dose dependent rect. 15 21
686 429.51 humidity 60 1440 > th dose dependent sin 2 NA
871 431.84 radiation 1 1440 > th dose independent sin 13 NA
891 432.14 humidity 60 1440 > th dose dependent rect. 3 12
892 432.18 radiation 1 1440 < th dose independent sin 13 NA
941 432.82 humidity 90 1440 < th dose dependent rect. 2 22