Os02g0213000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0213000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.83 | 0.569 | 5.1 | -0.734 | 0.528 | 3.75 | 1.82 | -0.899 | -0.243 | 3.61 | 19.49 | 93 | -- | -- |
| 147.3 | 0.565 | 5.08 | -0.58 | 0.521 | 3.74 | 2.1 | -- | -0.2 | 3.53 | 19.3 | 94 | -- | -- |
| 152.75 | 0.576 | 5.12 | -1.02 | 0.616 | 3.79 | -- | -2.32 | -0.281 | 5.21 | 19.53 | 130 | -- | -- |
| 158.52 | 0.586 | 5.07 | -0.611 | 0.556 | 3.68 | -- | -- | -0.185 | 5.18 | 18.83 | 128 | -- | -- |
| 163.73 | 0.596 | 5.12 | -0.9 | -- | 3.31 | -- | -2.45 | -0.233 | -- | 19.38 | 92 | -- | -- |
| 352.18 | 0.88 | 4.94 | 0.263 | 0.858 | -- | -1.17 | -- | 0.435 | 14.4 | -- | -- | -- | -- |
| 357.2 | 0.885 | 4.94 | 0.231 | 0.858 | -- | -- | -- | 0.428 | 14.4 | -- | -- | -- | -- |
| 167.96 | 0.604 | 5.07 | -0.581 | -- | 3.96 | -- | -- | -0.127 | -- | 14.62 | 97 | -- | -- |
| 167.02 | 0.602 | 5.05 | -- | 0.476 | 3.39 | -- | -- | -0.0855 | 5.41 | 19.4 | 120 | -- | -- |
| 400.57 | 0.935 | 4.95 | 0.195 | -- | -- | -- | -- | 0.407 | -- | -- | -- | -- | -- |
| 358.61 | 0.886 | 4.95 | -- | 0.853 | -- | -- | -- | 0.403 | 14.4 | -- | -- | -- | -- |
| 175.25 | 0.617 | 5.05 | -- | -- | 3.1 | -- | -- | -0.0432 | -- | 19.24 | 107 | -- | -- |
| 401.58 | 0.935 | 4.95 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 3 | 147.17 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 7 | 149.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 19 | 152.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 29 | 155.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 34 | 155.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 47 | 156.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 67 | 156.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 86 | 157.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 87 | 157.27 | temperature | 30 | 1440 | < th | dose dependent | sin | 5 | NA |
| 88 | 157.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 110 | 157.82 | temperature | 10 | 1440 | > th | dose dependent | sin | 5 | NA |
| 146 | 158.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 150 | 158.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 272 | 160.71 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 278 | 160.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 20 |
| 362 | 161.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 437 | 162.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 464 | 162.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 486 | 162.51 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 554 | 162.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 570 | 163.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 574 | 163.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 589 | 163.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 725 | 164.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 733 | 164.35 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 766 | 164.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 777 | 164.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 815 | 165.02 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 915 | 165.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |