Os02g0212500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0212500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186 | 0.641 | 6.72 | -0.844 | 0.683 | 0.945 | -0.176 | -5.1 | -0.0602 | 6.26 | 24.7 | 1438 | -- | -- |
| 215.84 | 0.684 | 6.53 | 0.784 | 0.938 | 0.671 | -0.281 | -- | 0.423 | 6.95 | 25.4 | 806 | -- | -- |
| 186.06 | 0.635 | 6.72 | -0.85 | 0.683 | 0.946 | -- | -5.12 | -0.061 | 6.18 | 24.69 | 1440 | -- | -- |
| 216.11 | 0.685 | 6.53 | 0.777 | 0.919 | 0.677 | -- | -- | 0.425 | 6.99 | 25.4 | 823 | -- | -- |
| 209.08 | 0.673 | 6.73 | -0.872 | -- | 1.07 | -- | -5.27 | -0.0764 | -- | 24.83 | 1374 | -- | -- |
| 230.28 | 0.711 | 6.48 | 0.968 | 0.732 | -- | -0.296 | -- | 0.669 | 6.05 | -- | -- | -- | -- |
| 230.49 | 0.711 | 6.48 | 0.964 | 0.73 | -- | -- | -- | 0.67 | 5.98 | -- | -- | -- | -- |
| 238.68 | 0.72 | 6.53 | 0.366 | -- | 1.23 | -- | -- | 0.473 | -- | 17.65 | 4772 | -- | -- |
| 229.99 | 0.706 | 6.59 | -- | 0.862 | 0.691 | -- | -- | 0.322 | 6.93 | 24.27 | 812 | -- | -- |
| 258.12 | 0.751 | 6.49 | 0.986 | -- | -- | -- | -- | 0.687 | -- | -- | -- | -- | -- |
| 255 | 0.747 | 6.5 | -- | 0.745 | -- | -- | -- | 0.562 | 5.91 | -- | -- | -- | -- |
| 236.03 | 0.716 | 6.56 | -- | -- | 1.13 | -- | -- | 0.37 | -- | 15.26 | 38219 | -- | -- |
| 283.76 | 0.786 | 6.52 | -- | -- | -- | -- | -- | 0.577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 10 | 182.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 19 | 183.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 24 | 183.41 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 35 | 183.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 44 | 183.86 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 53 | 184.06 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 57 | 184.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 66 | 184.36 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 21 |
| 122 | 185.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 183 | 186.37 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 20 |
| 195 | 186.54 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 21 |
| 243 | 186.80 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 244 | 186.80 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 249 | 186.84 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 251 | 186.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 259 | 186.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 290 | 187.15 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 296 | 187.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 306 | 187.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 307 | 187.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 326 | 187.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 366 | 187.76 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 10 |
| 378 | 187.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 464 | 188.52 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 584 | 189.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 6 |
| 587 | 189.25 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 13 |
| 590 | 189.26 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 7 |
| 628 | 189.43 | radiation | 1 | 4320 | > th | dose independent | sin | 17 | NA |
| 670 | 189.61 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 13 |
| 678 | 189.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 714 | 189.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 814 | 190.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 822 | 190.12 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 826 | 190.14 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 872 | 190.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 929 | 190.40 | radiation | 1 | 4320 | < th | dose dependent | sin | 17 | NA |
| 934 | 190.41 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 936 | 190.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 993 | 190.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 19 |